RNA id: TU84666



Basic Information


Item Value
RNA id TU84666
length 430
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G63190
representative True

Chromosome Information


Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 20016232 ~ 20016661 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GAGATTGACCTGCAGGAGGAGAGAATTCGCCTGCGCTGCAGCTGTGGAGCAGGGTGTTGTCTGGCTGGAATTagaacaagaggaagacacgtGGACCATCCCGCCCCGAAAGGAACCGTAGAGAGCAACCGTGGAACTTTGATTCGATACCGAGGGCCGCGACTGAAGGACTCAGCACCCGTGGACTAACTGTATTTGGGCCACTGTACCGAGTTTGACTGGAGGACGCTGTGTGTAAGTTTTGAAACCAACTGTTGGAGGGACACCTAACCAGACTGTAAGGAATGATGAATGCTGGCTACTCAGtctacaatctatatttttgagGACACTTAAATCGGGCGGAAAAAAAGGAGACTGTATGTAAGTTTCGGAGCCGAGCTTTAAAGGGACACTTAACCAGACTTAAAATACATGATAAATGCTGGCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU84665 lncRNA upstream 983 20015004 ~ 20015249 (+) True G63189
TU84572 lncRNA upstream 141088 19873101 ~ 19875144 (+) True G63128
TU84504 lncRNA upstream 183905 19780965 ~ 19832327 (+) True G63087
TU84494 lncRNA upstream 253178 19759812 ~ 19763054 (+) False c6h2orf68
TU84495 lncRNA upstream 253178 19760754 ~ 19763054 (+) False c6h2orf68
TU84668 lncRNA downstream 1456 20018117 ~ 20018412 (+) True G63192
TU84678 lncRNA downstream 8252 20024913 ~ 20025748 (+) True G63202
TU84679 lncRNA downstream 9094 20025755 ~ 20026755 (+) True G63203
TU84680 lncRNA downstream 10249 20026910 ~ 20027166 (+) True G63204
TU84965 lncRNA downstream 375746 20392407 ~ 20392631 (+) True G63385
XM_039803917.1 mRNA upstream 12337 20001950 ~ 20003895 (+) True LOC120560984
XM_039803916.1 mRNA upstream 31264 19983835 ~ 19984968 (+) True LOC120560983
XM_039803909.1 mRNA upstream 67763 19943828 ~ 19948469 (+) False kmt5ab
XM_039803908.1 mRNA upstream 67763 19943830 ~ 19948469 (+) True kmt5ab
XM_039803912.1 mRNA upstream 73383 19941608 ~ 19942849 (+) False mtrfr
XM_039803918.1 mRNA downstream 15214 20031875 ~ 20034097 (+) True LOC120560988
XM_039803891.1 mRNA downstream 50796 20067457 ~ 20074264 (+) True rsrc2
XM_039803892.1 mRNA downstream 50797 20067458 ~ 20074264 (+) False rsrc2
XM_039803889.1 mRNA downstream 60221 20076882 ~ 20082990 (+) True zcchc8
XM_039803890.1 mRNA downstream 60221 20076882 ~ 20082990 (+) False zcchc8
TU84360 other upstream 567282 19434907 ~ 19448950 (+) False rasl10a
XR_005639481.1 other upstream 1335071 18661157 ~ 18681161 (+) False acacb
TU83744 other upstream 1596642 18416128 ~ 18419590 (+) False tbx5b
TU83742 other upstream 1600226 18407387 ~ 18416006 (+) False tbx5b
TU83701 other upstream 1685002 18330705 ~ 18331230 (+) True G62513
XR_005639482.1 other downstream 461151 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other downstream 461151 20477812 ~ 20488838 (+) False wdr31
TU85087 other downstream 659756 20676417 ~ 20677916 (+) True G63480
XR_005639510.1 other downstream 1572215 21588876 ~ 21598799 (+) False LOC120560787
TU85622 other downstream 2913238 22929899 ~ 22930205 (+) True G63905

Expression Profile