RNA id: TU84668



Basic Information


Item Value
RNA id TU84668
length 296
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G63192
representative True

Chromosome Information


Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 20018117 ~ 20018412 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GTCACAAGTCGAACAGAGCTAAATGATTTGCTAAGGAGagctgaattcataatgcacagagtgaggcaaaattactattttaatggttgcaaaccaagcaaattgcttgctctgaaattaaaacaaagcgagtCCAGAGCAGCTATCAATAGCATCCGCACGGACAGAGGTATCTCAACGAATCCTAAAGACATCACCGCCACTTTCCaatccttttattcaaagttgtATGAATCCTCCTGCAATCCGGATCCGACACAGTGCCTAAAGTTCCTGAAAGCgctaaacctgcctct

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU84666 lncRNA upstream 1456 20016232 ~ 20016661 (+) True G63190
TU84665 lncRNA upstream 2868 20015004 ~ 20015249 (+) True G63189
TU84572 lncRNA upstream 142973 19873101 ~ 19875144 (+) True G63128
TU84504 lncRNA upstream 185790 19780965 ~ 19832327 (+) True G63087
TU84494 lncRNA upstream 255063 19759812 ~ 19763054 (+) False c6h2orf68
TU84678 lncRNA downstream 6501 20024913 ~ 20025748 (+) True G63202
TU84679 lncRNA downstream 7343 20025755 ~ 20026755 (+) True G63203
TU84680 lncRNA downstream 8498 20026910 ~ 20027166 (+) True G63204
TU84965 lncRNA downstream 373995 20392407 ~ 20392631 (+) True G63385
TU84955 lncRNA downstream 423299 20441711 ~ 20442055 (+) False vps13a
XM_039803917.1 mRNA upstream 14222 20001950 ~ 20003895 (+) True LOC120560984
XM_039803916.1 mRNA upstream 33149 19983835 ~ 19984968 (+) True LOC120560983
XM_039803909.1 mRNA upstream 69648 19943828 ~ 19948469 (+) False kmt5ab
XM_039803908.1 mRNA upstream 69648 19943830 ~ 19948469 (+) True kmt5ab
XM_039803912.1 mRNA upstream 75268 19941608 ~ 19942849 (+) False mtrfr
XM_039803918.1 mRNA downstream 13463 20031875 ~ 20034097 (+) True LOC120560988
XM_039803891.1 mRNA downstream 49045 20067457 ~ 20074264 (+) True rsrc2
XM_039803892.1 mRNA downstream 49046 20067458 ~ 20074264 (+) False rsrc2
XM_039803889.1 mRNA downstream 58470 20076882 ~ 20082990 (+) True zcchc8
XM_039803890.1 mRNA downstream 58470 20076882 ~ 20082990 (+) False zcchc8
TU84360 other upstream 569167 19434907 ~ 19448950 (+) False rasl10a
XR_005639481.1 other upstream 1336956 18661157 ~ 18681161 (+) False acacb
TU83744 other upstream 1598527 18416128 ~ 18419590 (+) False tbx5b
TU83742 other upstream 1602111 18407387 ~ 18416006 (+) False tbx5b
TU83701 other upstream 1686887 18330705 ~ 18331230 (+) True G62513
XR_005639482.1 other downstream 459400 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other downstream 459400 20477812 ~ 20488838 (+) False wdr31
TU85087 other downstream 658005 20676417 ~ 20677916 (+) True G63480
XR_005639510.1 other downstream 1570464 21588876 ~ 21598799 (+) False LOC120560787
TU85622 other downstream 2911487 22929899 ~ 22930205 (+) True G63905

Expression Profile