RNA id: TU84680


Basic Information

Item Value
RNA id TU84680
length 257
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G63204
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 20026910 ~ 20027166 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggccCTTTTAGAGACTATTACTGTACATTATAATCACACAGCTTCCCACGCAGCAATCTCCATTTTTAAAAGTCACGTGAATTTGAAAGAGAAGTAAGCTCACACTGGCTGAGATGCGGCTCTGACTTCATTGTATCAACTAGTCTACCGCTGAATCAAACAGGAAGCATCTTCTTGATGTATAGTGCTTGTGGTTCATGCACCACATTAGCCCTGAGCCCTTTTGTATCTGTGTGCTCTCACGGATCATCACCTAC

Function

GO:

id name namespace
GO:0007224 smoothened signaling pathway biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84679 lncRNA upstream 155 20025755 ~ 20026755 (+) True G63203
TU84678 lncRNA upstream 1162 20024913 ~ 20025748 (+) True G63202
TU84668 lncRNA upstream 8498 20018117 ~ 20018412 (+) True G63192
TU84666 lncRNA upstream 10249 20016232 ~ 20016661 (+) True G63190
TU84665 lncRNA upstream 11661 20015004 ~ 20015249 (+) True G63189
TU84965 lncRNA downstream 365241 20392407 ~ 20392631 (+) True G63385
TU84955 lncRNA downstream 414545 20441711 ~ 20442055 (+) False vps13a
TU84956 lncRNA downstream 414988 20442154 ~ 20442952 (+) True G63377
XR_005639468.1 lncRNA downstream 531174 20558340 ~ 20564445 (+) True LOC120560275
TU85049 lncRNA downstream 538502 20565668 ~ 20566142 (+) True G63451
XM_039803917.1 mRNA upstream 23015 20001950 ~ 20003895 (+) True LOC120560984
XM_039803916.1 mRNA upstream 41942 19983835 ~ 19984968 (+) True LOC120560983
XM_039803909.1 mRNA upstream 78441 19943828 ~ 19948469 (+) False kmt5ab
XM_039803908.1 mRNA upstream 78441 19943830 ~ 19948469 (+) True kmt5ab
XM_039803912.1 mRNA upstream 84061 19941608 ~ 19942849 (+) False mtrfr
XM_039803918.1 mRNA downstream 4709 20031875 ~ 20034097 (+) True LOC120560988
XM_039803891.1 mRNA downstream 40291 20067457 ~ 20074264 (+) True rsrc2
XM_039803892.1 mRNA downstream 40292 20067458 ~ 20074264 (+) False rsrc2
XM_039803889.1 mRNA downstream 49716 20076882 ~ 20082990 (+) True zcchc8
XM_039803890.1 mRNA downstream 49716 20076882 ~ 20082990 (+) False zcchc8
TU84360 other upstream 577960 19434907 ~ 19448950 (+) False rasl10a
XR_005639481.1 other upstream 1345749 18661157 ~ 18681161 (+) False acacb
TU83744 other upstream 1607320 18416128 ~ 18419590 (+) False tbx5b
TU83742 other upstream 1610904 18407387 ~ 18416006 (+) False tbx5b
TU83701 other upstream 1695680 18330705 ~ 18331230 (+) True G62513
XR_005639482.1 other downstream 450646 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other downstream 450646 20477812 ~ 20488838 (+) False wdr31
TU85087 other downstream 649251 20676417 ~ 20677916 (+) True G63480
XR_005639510.1 other downstream 1561710 21588876 ~ 21598799 (+) False LOC120560787
TU85622 other downstream 2902733 22929899 ~ 22930205 (+) True G63905

Expression Profile