RNA id: TU85049


Basic Information

Item Value
RNA id TU85049
length 475
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G63451
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 20565668 ~ 20566142 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgaaaacctgcaggctgctgactggtcggaaagaatcgtcactgatcactgcattgctagcgacagacagcatttttaaatagtttagccagcggtgttttttgctgccggaggctccacgcagagctttctccgtagcatacaagtggcctgatgtttatacttgtgcgctagtgtgtgcatgtgtgatgtgtgtgtgtgtcgagtcgccttatgtgtgtgtgtgtggggagctagtgagcgagggagaagtgagagagtgacggcgattatctcagcagcgagtagcgactctagagtcatatatatatgtgagagaaacaaagtgtctcccctgttctttctgaccactgtgggaaatctggagcagtaaacgttaactatctctttgatatcatgttgtttacggagacggagaaccaggaaatgagtcggggataTGTCAATGGGAAAAGCAAgctactaagccacgcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639468.1 lncRNA upstream 1223 20558340 ~ 20564445 (+) True LOC120560275
TU84956 lncRNA upstream 122716 20442154 ~ 20442952 (+) True G63377
TU84955 lncRNA upstream 123613 20441711 ~ 20442055 (+) False vps13a
TU84965 lncRNA upstream 173037 20392407 ~ 20392631 (+) True G63385
TU84680 lncRNA upstream 538502 20026910 ~ 20027166 (+) True G63204
TU85055 lncRNA downstream 69447 20635589 ~ 20637358 (+) True G63457
TU85057 lncRNA downstream 69447 20635589 ~ 20637358 (+) False G63457
TU85062 lncRNA downstream 74616 20640758 ~ 20641102 (+) True G63460
TU85067 lncRNA downstream 76775 20642917 ~ 20643272 (+) True G63465
TU85070 lncRNA downstream 80050 20646192 ~ 20647497 (+) True G63468
XM_039803737.1 mRNA upstream 13849 20499130 ~ 20551819 (+) True stpg2
XM_039802893.1 mRNA upstream 75082 20476839 ~ 20490586 (+) False wdr31
XM_039802570.1 mRNA downstream 283844 20849986 ~ 21049849 (+) True si:ch73-72b7.1
XM_039802571.1 mRNA downstream 283844 20849986 ~ 21049849 (+) False si:ch73-72b7.1
XM_039802572.1 mRNA downstream 353497 20919639 ~ 21049849 (+) False si:ch73-72b7.1
XM_039803803.1 mRNA downstream 712260 21278402 ~ 21282508 (+) True LOC120560913
XM_039804144.1 mRNA downstream 827631 21393773 ~ 21403390 (+) True LOC120561163
XR_005639482.1 other upstream 76830 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other upstream 76830 20477812 ~ 20488838 (+) False wdr31
TU84360 other upstream 1116718 19434907 ~ 19448950 (+) False rasl10a
XR_005639481.1 other upstream 1884507 18661157 ~ 18681161 (+) False acacb
TU83744 other upstream 2146078 18416128 ~ 18419590 (+) False tbx5b
TU85087 other downstream 110275 20676417 ~ 20677916 (+) True G63480
XR_005639510.1 other downstream 1022734 21588876 ~ 21598799 (+) False LOC120560787
TU85622 other downstream 2363757 22929899 ~ 22930205 (+) True G63905
TU85875 other downstream 3126520 23692662 ~ 23693291 (+) True G64108
XR_005639471.1 other downstream 4257576 24823718 ~ 24834631 (+) False cdc14b

Expression Profile