RNA id: TU85062



Basic Information


Item Value
RNA id TU85062
length 345
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G63460
representative True

Chromosome Information


Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 20640758 ~ 20641102 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


acagaaagccatagagaaagggtataagattgtttccattgctgaagtttggcatttcccagaaaaaactgatcagctttttaaagcctatgttaaaacatttcttaaacgTAAGCAAGAAGCTTCAGGATACCCTGGGCATATCAAAACGGAAGAcgaaaaacaaaagtacatagATGACTATTATGCACACGAAGGCATTCGTCTTGATCCGACCAagatatgttttaacaaagctgtcaggcatacaaataaattgcttcTGAATAGTCTTTGGGGCAAATTTGCCATGCGTAGCAACATGACTACTGCTGAGCTCATAACCGAACCATCCCGCTTCACACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU85055 lncRNA upstream 3400 20635589 ~ 20637358 (+) True G63457
TU85057 lncRNA upstream 3400 20635589 ~ 20637358 (+) False G63457
TU85049 lncRNA upstream 74616 20565668 ~ 20566142 (+) True G63451
XR_005639468.1 lncRNA upstream 76313 20558340 ~ 20564445 (+) True LOC120560275
TU84956 lncRNA upstream 197806 20442154 ~ 20442952 (+) True G63377
TU85067 lncRNA downstream 1815 20642917 ~ 20643272 (+) True G63465
TU85070 lncRNA downstream 5090 20646192 ~ 20647497 (+) True G63468
TU85071 lncRNA downstream 5137 20646239 ~ 20647497 (+) False G63468
TU85076 lncRNA downstream 19738 20660840 ~ 20661157 (+) True G63471
TU85120 lncRNA downstream 523714 21164816 ~ 21222651 (+) True G63511
XM_039803737.1 mRNA upstream 88939 20499130 ~ 20551819 (+) True stpg2
XM_039802893.1 mRNA upstream 150172 20476839 ~ 20490586 (+) False wdr31
XM_039802570.1 mRNA downstream 208884 20849986 ~ 21049849 (+) True si:ch73-72b7.1
XM_039802571.1 mRNA downstream 208884 20849986 ~ 21049849 (+) False si:ch73-72b7.1
XM_039802572.1 mRNA downstream 278537 20919639 ~ 21049849 (+) False si:ch73-72b7.1
XM_039803803.1 mRNA downstream 637300 21278402 ~ 21282508 (+) True LOC120560913
XM_039804144.1 mRNA downstream 752671 21393773 ~ 21403390 (+) True LOC120561163
XR_005639482.1 other upstream 151920 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other upstream 151920 20477812 ~ 20488838 (+) False wdr31
TU84360 other upstream 1191808 19434907 ~ 19448950 (+) False rasl10a
XR_005639481.1 other upstream 1959597 18661157 ~ 18681161 (+) False acacb
TU83744 other upstream 2221168 18416128 ~ 18419590 (+) False tbx5b
TU85087 other downstream 35315 20676417 ~ 20677916 (+) True G63480
XR_005639510.1 other downstream 947774 21588876 ~ 21598799 (+) False LOC120560787
TU85622 other downstream 2288797 22929899 ~ 22930205 (+) True G63905
TU85875 other downstream 3051560 23692662 ~ 23693291 (+) True G64108
XR_005639471.1 other downstream 4182616 24823718 ~ 24834631 (+) False cdc14b

Expression Profile