RNA id: TU85067



Basic Information


Item Value
RNA id TU85067
length 356
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G63465
representative True

Chromosome Information


Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 20642917 ~ 20643272 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


gtatatgaaaaagctaaaagatattCAAGTATTCTACAGAGGTACCTGGTCATGATAAAACAGGGTGAACGCGAGAAACGTGTGATTACATTATCAATGCCTGAAGTTGATTCAAAGGAttcaaaagatgaagaagaaaatatgttaaaaacagaagtgttgaaacatatgcctataagaaacaaaagaaatgcggAATACATATTGGCTTCATTATCCCGACACAATGACCAGATATCTTGGACAGATCAAGGGGAAATAGTTGTTGGAAATAAGAATGTGCCAGGTAGTCATCTGTATGATCTGCTGAAAAGTGTCACAGCCCAtaataatgttgcagaccgCTCTAGACCAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU85062 lncRNA upstream 1815 20640758 ~ 20641102 (+) True G63460
TU85055 lncRNA upstream 5559 20635589 ~ 20637358 (+) True G63457
TU85057 lncRNA upstream 5559 20635589 ~ 20637358 (+) False G63457
TU85049 lncRNA upstream 76775 20565668 ~ 20566142 (+) True G63451
XR_005639468.1 lncRNA upstream 78472 20558340 ~ 20564445 (+) True LOC120560275
TU85070 lncRNA downstream 2920 20646192 ~ 20647497 (+) True G63468
TU85071 lncRNA downstream 2967 20646239 ~ 20647497 (+) False G63468
TU85076 lncRNA downstream 17568 20660840 ~ 20661157 (+) True G63471
TU85120 lncRNA downstream 521544 21164816 ~ 21222651 (+) True G63511
TU85165 lncRNA downstream 669481 21312753 ~ 21314091 (+) True G63545
XM_039803737.1 mRNA upstream 91098 20499130 ~ 20551819 (+) True stpg2
XM_039802893.1 mRNA upstream 152331 20476839 ~ 20490586 (+) False wdr31
XM_039802570.1 mRNA downstream 206714 20849986 ~ 21049849 (+) True si:ch73-72b7.1
XM_039802571.1 mRNA downstream 206714 20849986 ~ 21049849 (+) False si:ch73-72b7.1
XM_039802572.1 mRNA downstream 276367 20919639 ~ 21049849 (+) False si:ch73-72b7.1
XM_039803803.1 mRNA downstream 635130 21278402 ~ 21282508 (+) True LOC120560913
XM_039804144.1 mRNA downstream 750501 21393773 ~ 21403390 (+) True LOC120561163
XR_005639482.1 other upstream 154079 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other upstream 154079 20477812 ~ 20488838 (+) False wdr31
TU84360 other upstream 1193967 19434907 ~ 19448950 (+) False rasl10a
XR_005639481.1 other upstream 1961756 18661157 ~ 18681161 (+) False acacb
TU83744 other upstream 2223327 18416128 ~ 18419590 (+) False tbx5b
TU85087 other downstream 33145 20676417 ~ 20677916 (+) True G63480
XR_005639510.1 other downstream 945604 21588876 ~ 21598799 (+) False LOC120560787
TU85622 other downstream 2286627 22929899 ~ 22930205 (+) True G63905
TU85875 other downstream 3049390 23692662 ~ 23693291 (+) True G64108
XR_005639471.1 other downstream 4180446 24823718 ~ 24834631 (+) False cdc14b

Expression Profile