RNA id: TU85120


Basic Information

Item Value
RNA id TU85120
length 2530
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G63511
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 21164816 ~ 21222651 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAATACGTAATCACTTTATTAGCTACAATATAGAATAATAGTTTTTCAAActcaaatgtcaaactgtttTCAAAAAGCAACACCATTACAATCTATGAAGAAGAACCTATTATTAAATCTGCAGTAAGTAAACATAGGgatgaaataaatgtaaaggCACTGgagaaatattttacattgccagggttttaaaataaaacctttGCATTACAAGCCATTTATAGCATGTATACAGTCCTTCTGTATACTATCATAGCTGAACAACCTGCTCTCTAAAAAGAGCCTTCCTGACTTGCATACAACCTATACCATACAAATGTCTTCTTCTTGGACGGTCTAGTTACATCCACATACAttgttttatactgtacatacacgcATAGCAAGTTGAAATCTCTCTTTCCATTTTTCAGATGCCACCATATTTCAAGACACTATTTTATAATATAGTTCCAATGCAGATATGACAGCTGTAAACAATCCAttaaagcttttaaaaaagGTCTGAAGTGTCTTCCATAACATGAAGTTATACAACAGTCCAAATGACATGAAGGAACATTCATAACTGTCTAATGCACTGGCTGCACTCTCACACAGACCAAGGCCAGATTTGCTATTTTCAGTGATTTAGAAATAGATTTAGAAATAGACTTATTCCTCAAAATCACACACCTTTCCTGTTTTGCCATATCtacattacagtagtacagAACACAATGAGGAAACAACAGTGTCGTAATGTAGTGTATTTGTAAAGACTGTTTTTTCAGTccttttttgtgtttctttctcaTTAGCTGTATGCAGACTTCCAGAATAGGCTGCAGGGTATgtttatttaaagctttagtgcgtaactttttaatattaatgaacgtcagctacattcaagccattgccaaatgagttgctacaaagctaattaagactatcagctcctcacaactctctctgtatttctcagtatggctatgttcagaagattgtgttgcCCAGCAACTTTTcgattacctcttctgaagaatccatcatgtttttttaatcctccgtgtccttctTGGtaactagcaactgcgtggaggaggggtgggggctgtgcgtgatcacggaaggcttgtatcatgtggatgcgccgacagtgttgttatCATTACTTAGAAATCCTCATGGaggtgacagaaactacgcactatagctttaaacattCCTGTGATTTCTGTGCATCATTATGTTCTTCTATGTTTAAGAATGAAAAGAGTGAATAATTCATAAAATGTTGTCTGTACAACTCTCAGCAGGCCACCTCAGCTGGTTTCCTTTTCTCATAACCATGGAAACTGGTCCTGCGTACTCTCTATCGCAACCAGAACATACAATATGCAGTATGTAAACTcagtatatgtactgtatgcgcTGTAGTAAAGACTATAAGTTCTGTAGTTAAGTCCGACATAGGCAAGGATGATGATGGACAGCTGCATATTTGAATTTGCATAGAATAATTGATTAGATCAATTCATTAAAAATTCTGGATTACTTATCTTCCATATTTGTTACTGTGGAAAATCATGCgacacaaaaccacacaaagATGAAGCTGGTAACATGTTCTTTGGCTCAATACTTCATCCTAACCATCCAAATTAGCATGCATATACCTTTCTTTTTCATGAAATCACAACTTTCTACACAGAAAGGAGCATACAAATGCTTTAACTATACCCAAAATAACGAATAATGAGGTGAATACACTATTAAAACTGAGAATTTATGTATACCTTTAGGGTTGGAGTCAGTGGAGTGGCCAAGCACATAAGCAacaattaaagggatactttgccgaTATTCAACCAATTTTGTATCATAATAATGTTGGTAGTATGTGTAAATGAACTATGTTAAACTTCCCTCCATCTTACCAGTGCCCAGACCTCCCTACTCACAGGCCAGCAGAAAAAGTGACGCGTTTGACGCAAAATGCGTCACTTGGAGGTTTGCTGCTGGCTCTAGTGCTGTTGCTCAAACTACAGACTGTACTGCATACGGACACAAAGAGTATAGAAGGGGATCGAACTTTCTCAAACTCAGACCGAACTCAGATTACATTGTAGACAGCTGATCAAATATAAGCCTAGATTCAGTCAATGTATTGCCTATTTTCtgcctaaaatgttttcagaaacgtATTTCAGCTTACCGTTAAACTGTTACACaagaacgttttttttttttaccagctgGCCACCATTCTGCAGAAGCGTTTATTGGTGCAGCTTAGTGCATTCTGGTAGTTGTAGGTTCTCTACCTTTTGTGCGAATGAGAATATCAGAGCTTTTTCTCTGCTCATGTAACACCAATTAAAAACAAGTTTGCACCATTCTACTGCATAGACAGCCCAGTTTGATGAAAATACCCTCTTTCCAGTGGTAACATACTTCTTTAATTAAAGGTCTGAATGAGGCCAGCAGCAGTGCAGCCACATAAAGTAACAGtgaaggacaaccacacacacacacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85076 lncRNA upstream 503659 20660840 ~ 20661157 (+) True G63471
TU85070 lncRNA upstream 517319 20646192 ~ 20647497 (+) True G63468
TU85071 lncRNA upstream 517319 20646239 ~ 20647497 (+) False G63468
TU85067 lncRNA upstream 521544 20642917 ~ 20643272 (+) True G63465
TU85062 lncRNA upstream 523714 20640758 ~ 20641102 (+) True G63460
TU85165 lncRNA downstream 90102 21312753 ~ 21314091 (+) True G63545
TU85205 lncRNA downstream 123716 21346367 ~ 21347517 (+) True G63576
TU85260 lncRNA downstream 257129 21479780 ~ 21484666 (+) True G63627
TU85261 lncRNA downstream 264118 21486769 ~ 21487038 (+) True G63628
XR_005639467.1 lncRNA downstream 386172 21608823 ~ 21620711 (+) True LOC120560273
XM_039802570.1 mRNA upstream 114967 20849986 ~ 21049849 (+) True si:ch73-72b7.1
XM_039802571.1 mRNA upstream 114967 20849986 ~ 21049849 (+) False si:ch73-72b7.1
XM_039802572.1 mRNA upstream 114967 20919639 ~ 21049849 (+) False si:ch73-72b7.1
XM_039803737.1 mRNA upstream 612997 20499130 ~ 20551819 (+) True stpg2
XM_039802893.1 mRNA upstream 674230 20476839 ~ 20490586 (+) False wdr31
XM_039803803.1 mRNA downstream 55751 21278402 ~ 21282508 (+) True LOC120560913
XM_039804144.1 mRNA downstream 171122 21393773 ~ 21403390 (+) True LOC120561163
XM_039803624.1 mRNA downstream 181312 21403963 ~ 21410730 (+) False golm1
XM_039803623.1 mRNA downstream 181313 21403964 ~ 21410730 (+) True golm1
XM_039802852.1 mRNA downstream 205692 21428343 ~ 21458347 (+) True agtpbp1
TU85087 other upstream 486900 20676417 ~ 20677916 (+) True G63480
XR_005639482.1 other upstream 675978 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other upstream 675978 20477812 ~ 20488838 (+) False wdr31
TU84360 other upstream 1715866 19434907 ~ 19448950 (+) False rasl10a
XR_005639481.1 other upstream 2483655 18661157 ~ 18681161 (+) False acacb
XR_005639510.1 other downstream 366225 21588876 ~ 21598799 (+) False LOC120560787
TU85622 other downstream 1707248 22929899 ~ 22930205 (+) True G63905
TU85875 other downstream 2470011 23692662 ~ 23693291 (+) True G64108
XR_005639471.1 other downstream 3601067 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other downstream 3601068 24823719 ~ 24834620 (+) False cdc14b

Expression Profile