RNA id: TU85261


Basic Information

Item Value
RNA id TU85261
length 270
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G63628
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 21486769 ~ 21487038 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTCATTATTGGAGAGCTGGTACCAAGGCTGTTTTCCATATGTGAAGATCTCCCAGAGAACAACACCGAGACTCCAAACATCACTTTCTGTGGTGAACTTTCTGTACATGATGCTTTCAGGGGGCATCCAACGGATTGGTAACATGGTGTGACCTCCGACCtttgaacacaacataaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85260 lncRNA upstream 2103 21479780 ~ 21484666 (+) True G63627
TU85205 lncRNA upstream 139252 21346367 ~ 21347517 (+) True G63576
TU85165 lncRNA upstream 172678 21312753 ~ 21314091 (+) True G63545
TU85120 lncRNA upstream 264118 21164816 ~ 21222651 (+) True G63511
TU85076 lncRNA upstream 825612 20660840 ~ 20661157 (+) True G63471
XR_005639467.1 lncRNA downstream 121785 21608823 ~ 21620711 (+) True LOC120560273
TU85279 lncRNA downstream 129185 21616223 ~ 21618602 (+) True G63641
TU85373 lncRNA downstream 357794 21844832 ~ 21845138 (+) True G63714
TU85374 lncRNA downstream 388407 21875445 ~ 21875687 (+) True G63715
TU85491 lncRNA downstream 644846 22131884 ~ 22150124 (+) True G63792
XM_039802852.1 mRNA upstream 28422 21428343 ~ 21458347 (+) True agtpbp1
XM_039802853.1 mRNA upstream 28422 21428343 ~ 21458347 (+) False agtpbp1
XM_039802854.1 mRNA upstream 28422 21428344 ~ 21458347 (+) False agtpbp1
XM_039802855.1 mRNA upstream 28422 21437450 ~ 21458347 (+) False agtpbp1
XM_039803623.1 mRNA upstream 76039 21403964 ~ 21410730 (+) True golm1
XM_039803635.1 mRNA downstream 101838 21588876 ~ 21599289 (+) True LOC120560787
XM_039803638.1 mRNA downstream 101838 21588876 ~ 21599153 (+) False LOC120560787
XM_039803636.1 mRNA downstream 101838 21588876 ~ 21599034 (+) False LOC120560787
XM_039803637.1 mRNA downstream 101838 21588876 ~ 21599002 (+) False LOC120560787
XM_039802564.1 mRNA downstream 139974 21627012 ~ 21641536 (+) True hnrnpk
TU85087 other upstream 808853 20676417 ~ 20677916 (+) True G63480
XR_005639482.1 other upstream 997931 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other upstream 997931 20477812 ~ 20488838 (+) False wdr31
TU84360 other upstream 2037819 19434907 ~ 19448950 (+) False rasl10a
XR_005639481.1 other upstream 2805608 18661157 ~ 18681161 (+) False acacb
XR_005639510.1 other downstream 101838 21588876 ~ 21598799 (+) False LOC120560787
TU85622 other downstream 1442861 22929899 ~ 22930205 (+) True G63905
TU85875 other downstream 2205624 23692662 ~ 23693291 (+) True G64108
XR_005639471.1 other downstream 3336680 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other downstream 3336681 24823719 ~ 24834620 (+) False cdc14b

Expression Profile