RNA id: TU85279


Basic Information

Item Value
RNA id TU85279
length 1991
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G63641
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 21616223 ~ 21618602 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTTTTCAATCATGTTTTATTAGTCAAAGAGTGTGAAAGACAATTATAAAACCTTAAGAACAATTCTATTTCAGTATACAGTAAACACTGTGGCAAAGCTTCAAATTtgtgatatatactgtatatatttatcaaagacaaaaacatagatGAGGCTCtataatgaaaagaaataatCAAAGCTCATGGACTCTCCTTTATCTCCCTTTCCTCTCATTCTCCTCTGGGGGAGTTTATTAAAGACCCATGCTGCCCTTGGATATTCAATCATTTGAAATGGATTTGAATAAATTCAAAGGCTGGCAATTCATTACAACAATCAGACTATGAACTATTTTCTCCCCCGATTCTCTTCTCTCATCTCACATGCTTCACTCTTCTCTTCACATAGTTTTTAATGTTACATACAATTTGGGATGCTCAACTCTGGattgtttaaactaacatgCTGATATCCTATCATTAATATGCAGTGCAGAAGATAGTATAGATCTGTTTACTTTGGTTGGGAGAGATGCAGTGCATTTCAAACAGAAAATAtctctgaataaatgaatgaaaacgACAAATGGCAGAATGTCACATTCACATATAGCAGATGGGATGCATTGCAACACACTGCTTGCTGATCATCAGACATCCAGTTCACACATTATGCTTTCCAAATCTGAAGCAGAAGGGCAGGTTGATCACCAAtcctaaaaaaaatcattagttTCATTACATGAGGGAGATTTTTAAGGCGATGCTTATATTTGCAATTTTTCATCACTGTATGAGGGCAATATACTTCTCCGCTGCCTGTAGTTTTTCTCATTATCGCCCACCTCTCCTCTGTGTCTATTTTCTCCTGTCTCGCACCCTTTGCTCCAGCTCCTGGACTATTTTCTCATTGACGGGGTCCGCCTTGGTCACCACAGCTTTTCTGCCGTCTGGTTCAACCACGACTGTCATAACACAGCACATATCCACCAGCTCCTCCTGACACCTCCTCATCCCAATGTCTAGCTCACCTCTCCTGGCTGGGTCACGCTTCAGGGCCCCCTTCTCCGCCACAGAGAAGCCCAGCAGGCCTGTCAAAACCTCATCGGACAGCTCCACGTCCAGGTCTCTGATGGACAGGGAGCTGATCTGGCCCTCCAGTCCTTGCAGTTTCTACCTCCACGAAAAAGCAGTCCATATCTTCATCCATGAAATCTGTGTCATCATTAGTAATACATTCTAAATCATGGGATGGCTCTAAAGCTGCTGCTGGGGAAAATAACTGCCCTGTAGCGCCAATGGTACAGCCTTGATAGTCTCTTTTCTGTGTGGTGGATCTGGAGTTGCTTGAACCAAGCTGTGACCCAGAGTCATTCAAAGTGTGCTGCTCAAACTGAGCAGTTGGGGCTTTTGTTGCTGTATTAGGATTTCCTGTTATTCTGTTGTTGTTCTGTGGCGTGCTTCTGTGACTGCTGTCATCATTTGTACTTTCTTGAAAAATCACACTGTCCAACTCATCCAGGGGAAGATCGTCAAAGTCTTCATCAGGAAAGTCTTCGTCTGCCATGTTGTGCTCTGGGATCTCTTGTTGAATCGAGGAGTCAAAGAGGTCAGAATCCTCTTGTTTGTTACCATGGCGATGactttggactgaaccacctCTGTTGCTCTGGGTCAAACCACTTCTATAAGAGCGGGCAGAGGCTTCACTTCTACAAGAGACCAACCAAAAATGTTAGACTGAGTTAATATAGCTTTAAACCAGCAAGTTTTTTTTAGTGTTGGTGGGCCCATTATGCTAGAGGCATACCCTAGAAATTAAAATCTCATGTCAGAATAGGTAGGAGTCTTTTTGGAAAAAGTAAAAGCTCTAACGCTACAGAAACAAGGGGACCAAGATAGTTATAAGTCAGTTATTAGTCTTAAACTTTGATTACAGCGTGAAGTGGGTACATTTACAATACCTTGACACCACAGCTTGTCGTTCAAGTCAAAACGATAAAATTATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85261 lncRNA upstream 129185 21486769 ~ 21487038 (+) True G63628
TU85260 lncRNA upstream 131557 21479780 ~ 21484666 (+) True G63627
TU85205 lncRNA upstream 268706 21346367 ~ 21347517 (+) True G63576
TU85165 lncRNA upstream 302132 21312753 ~ 21314091 (+) True G63545
TU85120 lncRNA upstream 393572 21164816 ~ 21222651 (+) True G63511
TU85373 lncRNA downstream 226230 21844832 ~ 21845138 (+) True G63714
TU85374 lncRNA downstream 256843 21875445 ~ 21875687 (+) True G63715
TU85491 lncRNA downstream 513282 22131884 ~ 22150124 (+) True G63792
TU85584 lncRNA downstream 1285433 22904035 ~ 22905966 (+) True G63872
TU85631 lncRNA downstream 1368579 22987181 ~ 22988040 (+) True G63914
XM_039803635.1 mRNA upstream 16934 21588876 ~ 21599289 (+) True LOC120560787
XM_039803638.1 mRNA upstream 17070 21588876 ~ 21599153 (+) False LOC120560787
XM_039803636.1 mRNA upstream 17189 21588876 ~ 21599034 (+) False LOC120560787
XM_039803637.1 mRNA upstream 17221 21588876 ~ 21599002 (+) False LOC120560787
XM_039802852.1 mRNA upstream 157876 21428343 ~ 21458347 (+) True agtpbp1
XM_039802564.1 mRNA downstream 8410 21627012 ~ 21641536 (+) True hnrnpk
XM_039802569.1 mRNA downstream 8410 21627012 ~ 21641536 (+) False hnrnpk
XM_039802568.1 mRNA downstream 8410 21627012 ~ 21641536 (+) False hnrnpk
XM_039802566.1 mRNA downstream 8516 21627118 ~ 21641536 (+) False hnrnpk
XM_039802567.1 mRNA downstream 8955 21627557 ~ 21641536 (+) False hnrnpk
XR_005639510.1 other upstream 17424 21588876 ~ 21598799 (+) False LOC120560787
TU85087 other upstream 938307 20676417 ~ 20677916 (+) True G63480
XR_005639482.1 other upstream 1127385 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other upstream 1127385 20477812 ~ 20488838 (+) False wdr31
TU84360 other upstream 2167273 19434907 ~ 19448950 (+) False rasl10a
TU85622 other downstream 1311297 22929899 ~ 22930205 (+) True G63905
TU85875 other downstream 2074060 23692662 ~ 23693291 (+) True G64108
XR_005639471.1 other downstream 3205116 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other downstream 3205117 24823719 ~ 24834620 (+) False cdc14b
TU86491 other downstream 4066370 25684972 ~ 25696570 (+) False LOC120561182

Expression Profile