RNA id: TU85373


Basic Information

Item Value
RNA id TU85373
length 307
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G63714
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 21844832 ~ 21845138 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgattacgatcggagatcccgcttgacggcatccgaagcagagccagaatgtcagagtgaatatttcggtgtggtctttaaaacattagcaaacctctttctagcacatgtattaacagagagagccgaacctgtcagctgtgttgtcgatgcctcgagagaaaaaaggaagcgactcagagcttgctgtaaagcagtatctctggccgtatatgtgtatgacgtcattgacattttaaaaggctttttagaacaaaaaagcgactttaaaaaaatctaacacccagcagtgtgtattttctctgcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639467.1 lncRNA upstream 224121 21608823 ~ 21620711 (+) True LOC120560273
TU85279 lncRNA upstream 226230 21616223 ~ 21618602 (+) True G63641
TU85261 lncRNA upstream 357794 21486769 ~ 21487038 (+) True G63628
TU85260 lncRNA upstream 360166 21479780 ~ 21484666 (+) True G63627
TU85205 lncRNA upstream 497315 21346367 ~ 21347517 (+) True G63576
TU85374 lncRNA downstream 30307 21875445 ~ 21875687 (+) True G63715
TU85491 lncRNA downstream 286746 22131884 ~ 22150124 (+) True G63792
TU85584 lncRNA downstream 1058897 22904035 ~ 22905966 (+) True G63872
TU85631 lncRNA downstream 1142043 22987181 ~ 22988040 (+) True G63914
XR_005639470.1 lncRNA downstream 1374712 23219850 ~ 23245368 (+) True LOC120560300
XM_039802127.1 mRNA upstream 60915 21765626 ~ 21783917 (+) False rasef
XM_039802126.1 mRNA upstream 60915 21765627 ~ 21783917 (+) True rasef
XM_039802128.1 mRNA upstream 60915 21765627 ~ 21783917 (+) False rasef
XM_039803516.1 mRNA upstream 82657 21751888 ~ 21762175 (+) False LOC120560723
XM_039803511.1 mRNA upstream 82657 21752655 ~ 21762175 (+) True LOC120560723
XM_039803170.1 mRNA downstream 34992 21880130 ~ 21892139 (+) False LOC120560549
XM_039803171.1 mRNA downstream 34992 21880130 ~ 21892139 (+) False LOC120560549
XM_039803172.1 mRNA downstream 36031 21881169 ~ 21892139 (+) True LOC120560549
XM_039804009.1 mRNA downstream 58074 21903212 ~ 21906827 (+) True tmed7
XM_039803346.1 mRNA downstream 63498 21908636 ~ 21917879 (+) True fem1c
XR_005639510.1 other upstream 246033 21588876 ~ 21598799 (+) False LOC120560787
TU85087 other upstream 1166916 20676417 ~ 20677916 (+) True G63480
XR_005639482.1 other upstream 1355994 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other upstream 1355994 20477812 ~ 20488838 (+) False wdr31
TU84360 other upstream 2395882 19434907 ~ 19448950 (+) False rasl10a
TU85622 other downstream 1084761 22929899 ~ 22930205 (+) True G63905
TU85875 other downstream 1847524 23692662 ~ 23693291 (+) True G64108
XR_005639471.1 other downstream 2978580 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other downstream 2978581 24823719 ~ 24834620 (+) False cdc14b
TU86491 other downstream 3839834 25684972 ~ 25696570 (+) False LOC120561182

Expression Profile