RNA id: TU85622


Basic Information

Item Value
RNA id TU85622
length 307
RNA type TUCP
GC content 0.51
exon number 1
gene id G63905
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 22929899 ~ 22930205 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

caatggttagcactgtggcctcacagcaagaaggttcctGGTTTGAATCCAGGGCGTTacggggcctttctgtgtggagtttgcatgttctccccatgtttgcgtgggtttcctccgggtactctggtttcccccaccatcaaaaacatgtactaggttctccagtcagtgcccttgatcaaggcactggctcagatctggagttggtccccgggcgctgtgattggctgcccactgctcccttgagggatgggttaaatgcagagaatgaatttcgctacatgtacgtgtatgtgacaaataaagt

Function

GO: NA

KEGG:

id description
ko00670 One carbon pool by folate

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85584 lncRNA upstream 23933 22904035 ~ 22905966 (+) True G63872
TU85491 lncRNA upstream 779775 22131884 ~ 22150124 (+) True G63792
TU85374 lncRNA upstream 1054212 21875445 ~ 21875687 (+) True G63715
TU85373 lncRNA upstream 1084761 21844832 ~ 21845138 (+) True G63714
XR_005639467.1 lncRNA upstream 1309188 21608823 ~ 21620711 (+) True LOC120560273
TU85631 lncRNA downstream 56976 22987181 ~ 22988040 (+) True G63914
XR_005639470.1 lncRNA downstream 289645 23219850 ~ 23245368 (+) True LOC120560300
TU85721 lncRNA downstream 344715 23274920 ~ 23281109 (+) True G63976
TU85782 lncRNA downstream 500485 23430690 ~ 23432473 (+) True G64026
TU85783 lncRNA downstream 501276 23431481 ~ 23443313 (+) False LOC120560908
XM_039803246.1 mRNA upstream 38880 22884588 ~ 22891019 (+) True elac1
XM_039803244.1 mRNA upstream 46025 22862584 ~ 22883874 (+) True me2
XM_039803245.1 mRNA upstream 46025 22862584 ~ 22883874 (+) False me2
XM_039804108.1 mRNA upstream 68026 22840502 ~ 22861873 (+) True mapk4
XM_039804109.1 mRNA upstream 68026 22840502 ~ 22861873 (+) False mapk4
XM_039802625.1 mRNA downstream 327056 23257261 ~ 23273702 (+) True ndufaf2
XM_039802627.1 mRNA downstream 352874 23283079 ~ 23330548 (+) True LOC120560302
XM_039802628.1 mRNA downstream 352875 23283080 ~ 23330548 (+) False LOC120560302
XM_039802630.1 mRNA downstream 352876 23283081 ~ 23330548 (+) False LOC120560302
XM_039804011.1 mRNA downstream 422745 23352950 ~ 23354264 (+) True LOC120561043
XR_005639510.1 other upstream 1331100 21588876 ~ 21598799 (+) False LOC120560787
TU85087 other upstream 2251983 20676417 ~ 20677916 (+) True G63480
XR_005639482.1 other upstream 2441061 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other upstream 2441061 20477812 ~ 20488838 (+) False wdr31
TU84360 other upstream 3480949 19434907 ~ 19448950 (+) False rasl10a
TU85875 other downstream 762457 23692662 ~ 23693291 (+) True G64108
XR_005639471.1 other downstream 1893513 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other downstream 1893514 24823719 ~ 24834620 (+) False cdc14b
TU86491 other downstream 2754767 25684972 ~ 25696570 (+) False LOC120561182
TU86550 other downstream 2984177 25914382 ~ 25915529 (+) False LOC120560031

Expression Profile