RNA id: XM_039803796.1


Basic Information

Item Value
RNA id XM_039803796.1
length 3984
RNA type mRNA
GC content 0.48
exon number 19
gene id LOC120560905
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 23487967 ~ 23562285 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTTGCTGTCGCGTAAGTATGACGTCATCGCCGCTCGACTTCGACATGACGGACACTGGTTTGTTGTAGATTTCATTCACAACAAGTAAAGCACGTACTTGTGAGTCCCAGACAGTGATTTAACCATCCTCTGCTCAACTTTGACGCCATTTGTGTAACATGGAGCCAGACAAGGACCTAAACCCGGACATGGATGACCTTCCACTCCGAGCCAATACTAACCACATACTTGTCAAACATTATGTGCTGGACCTGACTGTTCATTTTGACAGGAAGGTCATCAGTGGTAGTGTTGTTCTGTTCCTGGAGCCTTGCTCTGGATTAGGGACTAAGGCTGAGGATGACACTGGACCTGGAGCTGGGACTATAGAGGCCGGAGGGAGTCGGGATGTGACCGTGTGTATATCTCGGGATATGGATACAGTGGAGGATGGTACAAAAGGACTTGGGGAGACTACGACAAGGATGGAGAAGATGTCTGGTGCTAGTGAAAGGGATGGTGCTGAATTTCAGGCTTCGTCTGCCGTGGGGTCGCAGACTGCATCTAAAACCGAAAATATTCAGTCTTCACATTCGTGGGAAACCACCAGTGACGATGATTTCACCTTAGTGCTCGACTGCTGTGACTTGGATGTGTCAAAGGTGGAAGAGGTGGACGTCACCTCTGTGTCATCCATGGTTGCATCTGAGAGGTCAGATGTCAGTTCAGTGAACCCACAAGCAGCCTTTATTCAGAACCTTATCTCAGTGCCCTCTAGCCGACGGAGGCAGAAGCAACAGCTGTTTCTGCTGTGTAGCCGTGCCCATGGGGCTCAGGACGGCAGCTCACTGCATTTTCAGAGAGACCGATGGAGTCTGCAGGTGAGGAAGAAGGGGGTCGCGACACCTCAGGAGTTCCCTCGTGCTCTCAGGATCTGCTATGAGACGAGGCCAACCGGAGGCTCTGTGAGATGGACCAAAGACCAGGACAACAGGGTGTGTGTTTACACTGCCGGTTCTCCCATCAACAACCGAGCTCTCTTCCCCTGCCAGGAGCCGCCTGTTGCCATGTCAACATGGCATGCAACAGTACGGGCCCCTAGTGAGTGTGTGGTTTTGATGAGTGGGGAGGAGCAGACTGTACCTATTGAGGACGGGGACACACCCTTCTTAATCTGGAATTACTACGTCACTATGCCCATGCCTGCCTCCACCTTCACATTGGCAGTGGGTCACTGGCACCAAGTCACAGCAGAAATTCCCCCAGCATTGGAAAGAGGGGTGAGGGCCGGGGCGCATTGTAGCAAGATCGCCAAACTCGGGGCTGGGCCTGGAGAATGGACCGAGGCTGACCTTAGGTCTGGGCTTGTAAGCTCCATTAGTGAAGTAGTAAAGGGCTCTCCACTCAAGACTGGCagCGGAGACCAGACCACCCGCTCAGACTCTGCATTCTGTTACTCTTCCCTTGAGGATGAGGGGCTCTCTGTAACTGATGATTCAGGCATGGTGGATGATGGCATCTGTTGTTCCCATGACGACTACCCTTGCCGATTTACTGAGCAGTCGGCTAGGTCCCAGCGGGTGATTCCACACCGTGTGTTTGGCCCCGTCTGCTTGCTGCAGAAGGCCCAGGGAGTCCTTAAGCTGTTGCCTCGATGTTTGGCTGCAGCCCACACCGTTCTGGGTGTTCACCCCTTTCCTCGCCTTGATGTTCTCATCGTGCCGGCAGGATTCTCCAGTCTGGGCATGGCCAGCCCCCATATCATTTTCCTATCTCAGAGTGTGTTGTATGGTGGGAGTCTTGGTTCTGGAGAGAATGGCCTGTCTCTGTGTGGGTCCAGGATGTGCCATGAAATCGCCCACTCCTGGTTCGGCCTAGTTATTGGAGCCAGAGACTGGACTGAGGAATGGATCAGCGAGGGCTTTGCCACgtacctggaggacattatctGGGCCCAAGCACAACAACTCTCCTTACAAGAGACAGCAGAACAGTCTGACCTGAAGGCACTGCTGAGGTGGAGACGACTCTCTGATGAGTTGCAGAACTCTGAGGAGGCCCTTCAAATCCTCAGGCCTAACATGGAGCACACTGGTCAGGTCAGTGAGTCTGGCTCCTCCACGGTTAAACATGCCCTCAACCCTGAGAAAACCTTCATGCAAGTCCACTACCTCAAGGGTTACTTCCTCCTCAGGTTCTTGGCCAGTCAAGTGGGAGAGCAACAATTCATCGACTTCTTCAGATCATTTGTAAAGAAATACCACGGGCAACTCATTTTGTCTCAGgattTCCTGCGAATGCTGCTGATTACCTTTCCCAGCATGGAGAGAAAAGGCCTCACCCTCAATGCTATTTATGCTGACTGGCTGGATCGACCGGGAATTCCAAAGTGGCTGTATGAAAGGAGCGCCGTGTGGTCACAGACGAGGCTGGTGGAAGAAGTCAAAGCAGAGGTTGTAAAATGGATTCTCCTCAGTCAGAGTCATCAGGGAAAGGGCAGAAAGCGGAAGAGAATAGAGCCCAAGGTGAACTACAAAGAGGTGATCTCGGATCAGCTAGTAATGCTTTTGGAGCTTCTGCTGGAGGAAGAGAAGCTGACGGCAACAGTGCGTGCTCTACAGAGAACTTACAACCTACAGAATCAAGACGCTGAGGTGCAACATCGCTGGTGTGAGCTGGTGGTCAAACATGCGTACACTCGGGCTTACAGAGACGTGGAACACTTTCTGGTTCATGACCaggccATGGGTGTGTATCTGTACGGGGAGCTGATGGTTCAGGAGGACCCTGAGCAGCAGGCTCTGGCCCGTCGTTGCCTCTCATTGGTCACGGAACAAATggaccaatcagcacgcagagTGGTAGAGGAGATGGTCCTTTGATTTTGGAGGTTGACTACAGATGGAGATGACAGGAGTTTGGCGTACGAGGGTCCAGAGGGTTCACCTCCTCTTCTGTAAGAGAGGGGATGCTGCACAATCGCTCAGTAGAGTAAACACCAGAAGGCTGCACTCTTATTTTACAACCAAGGCCAATTGGCAAGGTTTAGAGTACAGCAGTTCTGTCCATTCAAGGCTAAAGAAATAAGTGGTGTGTGTAAACCAATAACAATACAAGATGTTCCTTGTGAGATGAAATGTTGTTGACTACATTATTGCATACTGTGGTCaaagaaaaatgacataatGTCACCGGTTTTAAAATGATAGACACTGGGAAAAGGGAGATATTTCACTGATAGAGATACTGCAtcactgtaaacccagatttagttgtaattaaactttttagtggtcactccttattctttcatgttttgttaagaAACATATTAattactaaatcacattagttgtttgtatTAATCAGCTAaagtatgcagtgcacagatcacattaagcagagataattaaggatgttaagtttctgtatgggaggggcggggtcacTTGAACTGTTCTTTTAGACACCATGACTCCAGAAAAAGATTATTTATGTTTACTAaggatttttagtaatgactactaatgtaaacttgatttgtctactgcatcaacttaccgctctgttttaatacaacttgacctgttaagtttcaccttgtgtaaaaacttaGATGGTTTTAAGCAACGGGTTTCCACACAAATTTCgagtaaagtcaactaatttgggATAACAGTGCACCTCCATCCATGTTTAAGAACCTGAGCTGTGTTtaagtttctgtgtgtgcaggtgtgacTTCATGTCTGTTTAGTCTGAAGCCATGATCTGGTTCTTAAGAGTTTAGACAGGAAATACTTTCAGATGAGTCAAGTTTTCATACATAACAAATTACTTCACTCTGGTCAGTAACAACACTGGAAAGTATACAACCTCTCGGGGCATTTCTATATGTGTAAATGATGATTTTGTAATTGCTGtgcaaactttttttctttgtatagGTCAAGTGAACATTTTTAATATGttcatgttaaaataaaatgttttcttaaaataaa

Function

GO:

id name namespace
GO:0019370 leukotriene biosynthetic process biological_process
GO:0006508 proteolysis biological_process
GO:0008237 metallopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K09606 C9ORF3; aminopeptidase O

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85783 lncRNA upstream 44654 23431481 ~ 23443313 (+) False LOC120560908
XR_005639533.1 lncRNA upstream 44986 23435058 ~ 23442981 (+) True LOC120560908
TU85782 lncRNA upstream 55494 23430690 ~ 23432473 (+) True G64026
TU85721 lncRNA upstream 206858 23274920 ~ 23281109 (+) True G63976
XR_005639470.1 lncRNA upstream 242599 23219850 ~ 23245368 (+) True LOC120560300
TU85900 lncRNA downstream 172539 23734824 ~ 23735293 (+) True G64127
TU85904 lncRNA downstream 182654 23744939 ~ 23749835 (+) True G64130
TU85948 lncRNA downstream 452793 24015078 ~ 24017068 (+) True G64172
TU85963 lncRNA downstream 487683 24049968 ~ 24058761 (+) True G64183
TU85970 lncRNA downstream 539221 24101506 ~ 24104352 (+) True G64188
XM_039803798.1 mRNA upstream 461 23408216 ~ 23487506 (+) True dock8
XM_039804011.1 mRNA upstream 133703 23352950 ~ 23354264 (+) True LOC120561043
XM_039802627.1 mRNA upstream 157419 23283079 ~ 23330548 (+) True LOC120560302
XM_039802628.1 mRNA upstream 157419 23283080 ~ 23330548 (+) False LOC120560302
XM_039802630.1 mRNA upstream 157419 23283081 ~ 23330548 (+) False LOC120560302
XM_039803799.1 mRNA downstream 142117 23704402 ~ 23722529 (+) True ercc6l2
XM_039803800.1 mRNA downstream 143992 23706277 ~ 23722529 (+) False ercc6l2
XM_039803178.1 mRNA downstream 192040 23754325 ~ 23904577 (+) False ipo11
XM_039803179.1 mRNA downstream 196436 23758721 ~ 23906456 (+) True ipo11
XM_039803739.1 mRNA downstream 430368 23992653 ~ 24000805 (+) True si:dkey-250l23.4
TU85622 other upstream 557762 22929899 ~ 22930205 (+) True G63905
XR_005639510.1 other upstream 1889168 21588876 ~ 21598799 (+) False LOC120560787
TU85087 other upstream 2810051 20676417 ~ 20677916 (+) True G63480
XR_005639482.1 other upstream 2999129 20477812 ~ 20488838 (+) False wdr31
TU85875 other downstream 130377 23692662 ~ 23693291 (+) True G64108
XR_005639471.1 other downstream 1261433 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other downstream 1261434 24823719 ~ 24834620 (+) False cdc14b
TU86491 other downstream 2122687 25684972 ~ 25696570 (+) False LOC120561182
TU86550 other downstream 2352097 25914382 ~ 25915529 (+) False LOC120560031

Expression Profile