RNA id: TU85900


Basic Information

Item Value
RNA id TU85900
length 470
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G64127
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 23734824 ~ 23735293 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGATATCAACTTCTCCCATATCAAAATTGTATGCGGCTGAGCATCATTTATTCTTCCTGACGACAATTCTAGGTAAGAGATATCCAAAAACGACCGGAGCCAGTGAACCCTAGAGATATCATGAGATTTCCAACGCTGAGCTACTATCTTCTTGGCTGCAGTTAAACCTGCTAGCCAAACTTTACGAGTTTTCTCTGGAAGACCAAGACGGGAATCATCATTTAAGAGATGCACCGCAGGATCCATTGGGAACTGGACACCTGTTAAATCGGCAATAACACCAATCACCTCCCTCCACAGACCAGATACCCCTGGGCATTCCCACATAACATGCATAAAGGAGCCAGTGGTTCCGTGGGGGCAGAATGAACAATACGGATCAGAGACCAGACCCATTTGGTGTCTTATTCTCGGTGATATCTCTATCCCAAGCTTTCATTCCTGGTGTGGGCATATATTTCTGGGAATT

Function

GO: NA

KEGG:

id description
ko04140 Autophagy - animal
ko04136 Autophagy - other

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85820 lncRNA upstream 172592 23525647 ~ 23562232 (+) False LOC120560905
TU85783 lncRNA upstream 291511 23431481 ~ 23443313 (+) False LOC120560908
XR_005639533.1 lncRNA upstream 291843 23435058 ~ 23442981 (+) True LOC120560908
TU85782 lncRNA upstream 302351 23430690 ~ 23432473 (+) True G64026
TU85721 lncRNA upstream 453715 23274920 ~ 23281109 (+) True G63976
TU85904 lncRNA downstream 9646 23744939 ~ 23749835 (+) True G64130
TU85948 lncRNA downstream 279785 24015078 ~ 24017068 (+) True G64172
TU85963 lncRNA downstream 314675 24049968 ~ 24058761 (+) True G64183
TU85970 lncRNA downstream 366213 24101506 ~ 24104352 (+) True G64188
TU85984 lncRNA downstream 429384 24164677 ~ 24169528 (+) True G64200
XM_039803799.1 mRNA upstream 12295 23704402 ~ 23722529 (+) True ercc6l2
XM_039803800.1 mRNA upstream 12295 23706277 ~ 23722529 (+) False ercc6l2
XM_039803796.1 mRNA upstream 172539 23487967 ~ 23562285 (+) True LOC120560905
XM_039803798.1 mRNA upstream 247318 23408216 ~ 23487506 (+) True dock8
XM_039804011.1 mRNA upstream 380560 23352950 ~ 23354264 (+) True LOC120561043
XM_039803178.1 mRNA downstream 19032 23754325 ~ 23904577 (+) False ipo11
XM_039803179.1 mRNA downstream 23428 23758721 ~ 23906456 (+) True ipo11
XM_039803739.1 mRNA downstream 257360 23992653 ~ 24000805 (+) True si:dkey-250l23.4
XM_039802040.1 mRNA downstream 268789 24004082 ~ 24013484 (+) True rgs7bpa
XM_039802041.1 mRNA downstream 268792 24004085 ~ 24013484 (+) False rgs7bpa
TU85875 other upstream 41533 23692662 ~ 23693291 (+) True G64108
TU85622 other upstream 804619 22929899 ~ 22930205 (+) True G63905
XR_005639510.1 other upstream 2136025 21588876 ~ 21598799 (+) False LOC120560787
TU85087 other upstream 3056908 20676417 ~ 20677916 (+) True G63480
XR_005639482.1 other upstream 3245986 20477812 ~ 20488838 (+) False wdr31
XR_005639471.1 other downstream 1088425 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other downstream 1088426 24823719 ~ 24834620 (+) False cdc14b
TU86491 other downstream 1949679 25684972 ~ 25696570 (+) False LOC120561182
TU86550 other downstream 2179089 25914382 ~ 25915529 (+) False LOC120560031
TU86770 other downstream 2677576 26412869 ~ 26414597 (+) True G64814

Expression Profile