RNA id: TU85948



Basic Information


Item Value
RNA id TU85948
length 1107
lncRNA type inter_gene
GC content 0.44
exon number 4
gene id G64172
representative True

Chromosome Information


Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 24015078 ~ 24017068 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TCTGCCTCTCAATATGAAAAAGTACAATAATGAAGGCTGGTGTTATGCTATTTATTCCTTGTCTCAATACAGTTTTACATTATAGTTTTATACATGCATAAATGtgtacttttacaatgtggtgaAGCAGTGACACTTGGTACAATACTAATTCACTGAAAAATATGAGGTTAAGTGTTAAGTGTTGAGGATTAATGTGTAAAGGAAGGTGAAGATATAAGGTCAATTCCTCCTCTTGCATCCTCAAGCAGCACAAGGCAAGATACTGACAACTGACACCTTTTGTCCCTTACATCGCTGTAGTCCTGCTTCACACTCGCTCATGGTCTGAGACGCTGCAGTCCCATCCTCCCCAACTTGAACGCATACATTTAATCCCGGGGTTAAGCAATCTGCAGAGTCCTTACAGCGACACTCGTTGGTTTGATCGTCACAGGTCTCCCACATGTGACAGTTGGTGCAGCCTGTTGTGTTGTGCTCTGGCCACTTGCAGGTGCTGTCCTCTGCTATTGTGTAGTTCTTTCCAATACACTGCAGTGCATGCATTTTGCACACATTCAGAAGGACTGATTTTCTATTCACGAAAGTAGTGGCACACACCTCCAAAGATGAACTGCATTCAAATGGCATTTTGCAAACACATTTTCCTCTGGAAGACTTCTCCCACGGTTTACATTGCACCGAAGGAGAGGGTTGTTGTGGTGTACTGACTGGGCTGCATTTGATTCCTGCTGGGTCTGGTGAAAAATGCAGACTGGGGTCACAAATAATTGTTGCTTCTCCAAGTAGCTGTCTACCCACTGGACAGGACAAGGTGACTGTGTCCCCTATGGCATAGGCCTGCTGTAAAGGTGAGGCTATGACGTCTTTAGTGAGGGACTTAATGTTGCACCTTGAGACTGGGAGAAAAGTGGGACTTTAACAAAGTAACAAATTTGTTTTGATTGTAAATGTTACACTTTGGTTATGGGTATTCACCTGTGCACAGTCCAGGGCTGGTAGACCAGGATTGATTAGCAGTGCATTCTAGGGTGCTCTCACCAACAAGATAATAACCGGCAGTGCAGGTATACTCAACCTTACTACCCACAAGGTAAATGTCCTTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU85904 lncRNA upstream 265243 23744939 ~ 23749835 (+) True G64130
TU85900 lncRNA upstream 279785 23734824 ~ 23735293 (+) True G64127
TU85820 lncRNA upstream 452846 23525647 ~ 23562232 (+) False LOC120560905
TU85783 lncRNA upstream 571765 23431481 ~ 23443313 (+) False LOC120560908
XR_005639533.1 lncRNA upstream 572097 23435058 ~ 23442981 (+) True LOC120560908
TU85963 lncRNA downstream 32900 24049968 ~ 24058761 (+) True G64183
TU85970 lncRNA downstream 84438 24101506 ~ 24104352 (+) True G64188
TU85984 lncRNA downstream 147609 24164677 ~ 24169528 (+) True G64200
TU85987 lncRNA downstream 147609 24164677 ~ 24168564 (+) False G64200
TU86026 lncRNA downstream 217206 24234274 ~ 24234488 (+) True G64235
XM_039802040.1 mRNA upstream 1594 24004082 ~ 24013484 (+) True rgs7bpa
XM_039802041.1 mRNA upstream 1594 24004085 ~ 24013484 (+) False rgs7bpa
XM_039803739.1 mRNA upstream 14273 23992653 ~ 24000805 (+) True si:dkey-250l23.4
XM_039803179.1 mRNA upstream 108622 23758721 ~ 23906456 (+) True ipo11
XM_039803178.1 mRNA upstream 110501 23754325 ~ 23904577 (+) False ipo11
XM_039803945.1 mRNA downstream 88922 24105990 ~ 24110189 (+) True c6h5orf51
XM_039803944.1 mRNA downstream 93252 24110320 ~ 24117183 (+) True fbxo4
XM_039803518.1 mRNA downstream 109795 24126863 ~ 24162470 (+) True ghra
XM_039802875.1 mRNA downstream 157373 24174441 ~ 24181811 (+) True znf131
XM_039802873.1 mRNA downstream 157613 24174681 ~ 24181811 (+) False znf131
TU85875 other upstream 321787 23692662 ~ 23693291 (+) True G64108
TU85622 other upstream 1084873 22929899 ~ 22930205 (+) True G63905
XR_005639510.1 other upstream 2416279 21588876 ~ 21598799 (+) False LOC120560787
TU85087 other upstream 3337162 20676417 ~ 20677916 (+) True G63480
XR_005639483.1 other upstream 3526240 20477812 ~ 20488838 (+) False wdr31
XR_005639471.1 other downstream 806650 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other downstream 806651 24823719 ~ 24834620 (+) False cdc14b
TU86491 other downstream 1667904 25684972 ~ 25696570 (+) False LOC120561182
TU86550 other downstream 1897314 25914382 ~ 25915529 (+) False LOC120560031
TU86770 other downstream 2395801 26412869 ~ 26414597 (+) True G64814

Expression Profile