RNA id: TU86075


Basic Information

Item Value
RNA id TU86075
length 439
lncRNA type sense_over
GC content 0.45
exon number 2
gene id prxl2c
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 24821314 ~ 24823066 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCAAGGTGGAGCCATCATTGCAGGACCAGGCTCTCATGTTCATTTTTCCCATTTTGACATGAACCGTCTGGATCACATGCCCATTAACTGGCTCCTGCAGCTCGCCGGAGTTCAACAGACTCTGGACTTCAGCGATAAGCCAAAGATCGTCCATGTGTAGCCAGCTGGCcgccttcctccctctccccacATCACTGTTTGGgcaacaaatatttttttagtcTATTTTTTTATCATGTCTGTACTGGGACGCTGCCTTGCCAAAATCTTGGATAGGTCTGAAATGTACAGTCTATGTTGAGTGTGAAAATTCATTCTTGACCAATGGAAACTGTATAGTTTGACAAAAATCTTAACTCAATGTCTTCTTCCTAAGCCCTTTGTCTCCTTGTGAAGCACAGCTCATTAACAATTCTTCTCCACCGACCACCGCTCTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86072 lncRNA upstream 143 24821314 ~ 24822348 (+) False prxl2c
TU86073 lncRNA upstream 143 24821314 ~ 24822348 (+) False prxl2c
XR_005639429.1 lncRNA upstream 303618 24514819 ~ 24518873 (+) True LOC120560123
TU86043 lncRNA upstream 459582 24362475 ~ 24362909 (+) True G64251
TU86026 lncRNA upstream 588003 24234274 ~ 24234488 (+) True G64235
TU86081 lncRNA downstream 37198 24860249 ~ 24862730 (+) True G64279
TU86090 lncRNA downstream 53511 24876562 ~ 24892517 (+) True G64287
XR_005639412.1 lncRNA downstream 211658 25034709 ~ 25040898 (+) True LOC120560056
TU86234 lncRNA downstream 386873 25209924 ~ 25210170 (+) True G64392
TU86313 lncRNA downstream 436665 25259716 ~ 25302920 (+) True G64450
XM_039804577.1 mRNA upstream 607402 24213241 ~ 24215089 (+) True gadd45ga
XM_039802878.1 mRNA upstream 612049 24203522 ~ 24210442 (+) True creb3l3l
XM_039802877.1 mRNA upstream 619507 24181917 ~ 24202984 (+) True nim1ka
XM_039802876.1 mRNA upstream 619507 24181917 ~ 24202984 (+) False nim1ka
XM_039802874.1 mRNA upstream 640680 24174681 ~ 24181811 (+) False znf131
XM_039802659.1 mRNA downstream 669 24823720 ~ 24837448 (+) True cdc14b
XM_039802660.1 mRNA downstream 669 24823720 ~ 24837448 (+) False cdc14b
XM_039802663.1 mRNA downstream 669 24823720 ~ 24837448 (+) False cdc14b
XM_039802664.1 mRNA downstream 669 24823720 ~ 24833636 (+) False cdc14b
XM_039802661.1 mRNA downstream 670 24823721 ~ 24836555 (+) False cdc14b
TU85875 other upstream 1129200 23692662 ~ 23693291 (+) True G64108
TU85622 other upstream 1892286 22929899 ~ 22930205 (+) True G63905
XR_005639510.1 other upstream 3223692 21588876 ~ 21598799 (+) False LOC120560787
TU85087 other upstream 4144575 20676417 ~ 20677916 (+) True G63480
XR_005639483.1 other upstream 4333653 20477812 ~ 20488838 (+) False wdr31
XR_005639471.1 other downstream 667 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other downstream 668 24823719 ~ 24834620 (+) False cdc14b
TU86491 other downstream 861921 25684972 ~ 25696570 (+) False LOC120561182
TU86550 other downstream 1091331 25914382 ~ 25915529 (+) False LOC120560031
TU86770 other downstream 1589818 26412869 ~ 26414597 (+) True G64814

Expression Profile