RNA id: XM_039804015.1


Basic Information

Item Value
RNA id XM_039804015.1
length 908
RNA type mRNA
GC content 0.44
exon number 7
gene id prxl2c
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 24821314 ~ 24823066 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGCGAATTCGGGAAGCCTGAAAAAAAATGGCTGAAGCAGTTTCACCAATAACTCGACAAGTAAATTCAGAACATCGTGCAATTAGGAGCCCTTCTGTCGATTTTCGTCTTGAAGACGTCGAAGATTGTTTAATTTACGACCGGCATGGAGTCTCTGATCCGTTCAAGAAATTATATCAAGACAGGAAATCGGTCATAATTTTCGTGCGGAATTTCTTGTGCTACAGCTGTAAAGAATATGTGGAGGATTTGAGCAAAATACCTAAAGAAGCACTGGAGGATGCTGACATTAGACTAGTTGTGATTGGCCAGTCTGCTCACCATCATATAGAGCCTTTCTGCTCATTGACGGGGTATCCTCATGAAATATATGTGGACCCAGAGAGGTGCATTTATCAAAAGCTTGggatgaagagagaggagaaattTACGGACTCAGCGTCCTGCGCACCCAAGCAAGGTGGAGCCATCATTGCAGGACCAGGCTCTCATGTTCATTTTTCCCATTTTGACATGAACCGTCTGGATCACATGCCCATTAACTGGCTCCTGCAGCTCGCCGGAGTTCAACAGACTCTGGACTTCAGCGATAAGCCAAAGATCGTCCATGTGTAGCCAGCTGGCcgccttcctccctctccccacATCACTGTTTGGgcaacaaatatttttttagtcTATTTTTTTATCATGTCTGTACTGGGACGCTGCCTTGCCAAAATCTTGGATAGGTCTGAAATGTACAGTCTATGTTGAGTGTGAAAATTCATTCTTGACCAATGGAAACTGTATAGTTTGACAAAAATCTTAACTCAATGTCTTCTTCCTAAGCCCTTTGTCTCCTTGTGAAGCACAGCTCATTAACAATTCTTCTCCACCGACCACCGCTCTCGGTTTTGGGATGCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639429.1 lncRNA upstream 302445 24514819 ~ 24518873 (+) True LOC120560123
TU86043 lncRNA upstream 458409 24362475 ~ 24362909 (+) True G64251
TU86026 lncRNA upstream 586830 24234274 ~ 24234488 (+) True G64235
TU85984 lncRNA upstream 651790 24164677 ~ 24169528 (+) True G64200
TU85987 lncRNA upstream 652754 24164677 ~ 24168564 (+) False G64200
TU86081 lncRNA downstream 37183 24860249 ~ 24862730 (+) True G64279
TU86090 lncRNA downstream 53496 24876562 ~ 24892517 (+) True G64287
XR_005639412.1 lncRNA downstream 211643 25034709 ~ 25040898 (+) True LOC120560056
TU86234 lncRNA downstream 386858 25209924 ~ 25210170 (+) True G64392
TU86313 lncRNA downstream 436650 25259716 ~ 25302920 (+) True G64450
XM_039804577.1 mRNA upstream 606229 24213241 ~ 24215089 (+) True gadd45ga
XM_039802878.1 mRNA upstream 610876 24203522 ~ 24210442 (+) True creb3l3l
XM_039802877.1 mRNA upstream 618334 24181917 ~ 24202984 (+) True nim1ka
XM_039802876.1 mRNA upstream 618334 24181917 ~ 24202984 (+) False nim1ka
XM_039802873.1 mRNA upstream 639507 24174681 ~ 24181811 (+) False znf131
XM_039802659.1 mRNA downstream 654 24823720 ~ 24837448 (+) True cdc14b
XM_039802660.1 mRNA downstream 654 24823720 ~ 24837448 (+) False cdc14b
XM_039802663.1 mRNA downstream 654 24823720 ~ 24837448 (+) False cdc14b
XM_039802664.1 mRNA downstream 654 24823720 ~ 24833636 (+) False cdc14b
XM_039802661.1 mRNA downstream 655 24823721 ~ 24836555 (+) False cdc14b
TU85875 other upstream 1128027 23692662 ~ 23693291 (+) True G64108
TU85622 other upstream 1891113 22929899 ~ 22930205 (+) True G63905
XR_005639510.1 other upstream 3222519 21588876 ~ 21598799 (+) False LOC120560787
TU85087 other upstream 4143402 20676417 ~ 20677916 (+) True G63480
XR_005639483.1 other upstream 4332480 20477812 ~ 20488838 (+) False wdr31
XR_005639471.1 other downstream 652 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other downstream 653 24823719 ~ 24834620 (+) False cdc14b
TU86491 other downstream 861906 25684972 ~ 25696570 (+) False LOC120561182
TU86550 other downstream 1091316 25914382 ~ 25915529 (+) False LOC120560031
TU86770 other downstream 1589803 26412869 ~ 26414597 (+) True G64814

Expression Profile