RNA id: TCONS_00074444


Basic Information

Item Value
RNA id TCONS_00074444
length 2788
lncRNA type lincRNA
GC content 0.36
exon number 2
gene id XLOC_037924
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 31264412 ~ 31271926 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTTTATCGTTATGGCTAACAGTCGCTTAGCGCGCTTATTGATAGGTGTCGTGCTTGTCCTTCGTGCATGCGTGTAAAGATGAGGCTGTTGAGAAAGTTTGCCGTCCCATCAAGTTAGAGGCCGGATGCTGATCCATTCCACATCTGACGAACTACCATGAGCAGCACATCAGAGTCGTGCCTCTGAATACAGCATCTTTCATAGAGGAAAAGGTCAACATTCAGTGAGAGGAAATCATCCTGCACAGCTGGACAACCACAGTGCTGGATCATCTCAGCGAGAAAAGAGAGTACAAATATACAACTCTTAAGTGTAAGAGAAGAACAGTCAAAGCCCTCAAAAATCCAGTCTGCTTCTATGACTTCCACATTACGATCACCTACATTAAGCATGCATCCAGTGCTTAATAAACACAGGCTCACCTAAAACCTCCTGGACTCACCGGCCACCTAAACCCCCTGTTGCCTTCACAAGGGTGGCTAGATGTTCTTAAACATCACAAGCCTCATTCTCTGTTTCAAGCTGACCTTGGAATGGCCATTAGACATGGCTTTGAACTACTGGAACTATCTCTTATAGACCAGTGTCAAGGGTCCCCCTGAGTTGATAATGACTTGCTTTCATAACTGCTGTGACATTTTGTGAAGGTACGCTAGGCGTGCTTACAGGCCATATCTACAGAATGCAATGCTTCCTTTCCCCCTCAGCAGGTGTGAATCTGAGCTGCATAGTCTGCGATTTACAGTGCTGTGTTTGCGCATCCTGGAATAAGCATAGGCCACACGCATATGTCCAACcttgataagcaatttggctcaCTATAGTGTCGACATGAATACGGCTGTACAGTGGGGACGCTTAGTTAAACATCAGAAACACAGTACTATGATGAAGCTGGCGTAGTGTGTTATGGATATTTTTAGTTATCTAAGCCATATGCTGGGGTAAAATTGTTGGATCAGTCACTTCTTGCATCATTTTTAAAGTgcctttattttaaagaaaaataagttTGTATataggggatagttcacccaaaaatgaacaattatgtcattatttgatcaccctttacttgtttcaatccTATATAAGTCTGTTCtgtagaagatattttgaaggaagctggaaacctgtaaccattgactgtcAGAATGTCAGcattcagaatatcttcttttatgtttaacagaagaatttttaatttttttgaactAACAAAgcctttaaaatgaaatacaatatAGAGTGATAACCAGTTATTCAAATTTCTTGCATTTCGATTAATGATTTGATCTTTGTTGTAATAGACTGGCGACCCTTCTCAGTAAtcatgtttctttgttttatcacAAATTAAACTATCTGTAAGgtgttaaaaagttttaaaatatcttcaaagTCTAAATTTTAGGcgttaaaagtcttaaatttactgcaATATTGTCTTGTAagtcttaaataatttttaacaggtCTTCATTTTCACCTATCCAATCACTAACCTTCCTTCtcaataaaaaatttaacaaaagattatttattaactttattaaccAATATGGTAACATTATCTTCCTACAATGTTTTAACTGGGCCAGTGGAAAAAATTCAAAATGTTTGGCTTTGTATAATGGTAGACCATTTCATTaccaatggtcttaaaaaggtcttaaatttaacttgatttAACCTGTAGAAACCCCATTTATATTACTATGCAGTACACTGTACATAAACATAACATCAACATGTTGGTATAAAGTTTACAGTTTTAcaatttacagtgctcagcatatatgcgtACACCCCTCTAAAAATCTATCTCTTAGATTCATAGTTTTAATAGGAATCtgtacaatattatttttgtgcatatacattagattagtcagtactgaagccaaatctggagcttatctaacaaaataacttacttaAACAGTCAAAAACGATTACACACAAATTTATGGTAtagaaaaacattaaacacaaatttaaaaaatagaagttttgttgaaattttgtaggttttatttatttattttttgcattatttagcctgaatgtaattgtattatctttcaatatctaaatatgtttggtgactaaaatcttattttaataaatatatctgtttaattaatctcttttgtttaaatgcactaaaatacattgcctacatCCACTgaaaaaaggataaaaatattcactttcaaaatggggtgtactcaattatgctgagcactgtatatggcAGTTTTCAATTTTGCCCACTATACTGCCTTCATGGCTACATTTCTTACATTACCTTATAGAAACCCTGTCAGATCTGATGTGAAATCTGAATCACGTAGGCCGCTGAATGTCTTCATGCCATGTCTAGTTCCTGCATGTGGATGGAAGAAGAGATAAATGAACTCTCTCGCTGTGCCCTTACATAAATGAGGGTTGATGAAAATGATGATAGGCTCGAGCTGCTGAAGAACTGATCCCAGTGGAGACCTTACAGTGCTCTGTCCCACTCACAAGACAAATTATATAATTAGGCACATGTCTTAGGGGACGCCAACCTTTGGCCCTTTCTTGACATCTTCAATGCTAAATGACAGCATATCTTGCTAAAATAACTGGGCAAATTCATCTTGGTGACACAAGCCGAATTCTCTTTACAGTTGTATTAATTGTCTGGTTTGGAGAAATCCCACTGAAATTACAATATCCAGCTACTCAAGGGAAACATTCTATTTGATTATAAAGATGATCACAATTCTTGGAGAGAGGAGT

Function

GO:

id name namespace
GO:0042982 amyloid precursor protein metabolic process biological_process
GO:0042983 amyloid precursor protein biosynthetic process biological_process
GO:0042984 regulation of amyloid precursor protein biosynthetic process biological_process
GO:0090278 negative regulation of peptide hormone secretion biological_process
GO:1903018 regulation of glycoprotein metabolic process biological_process
GO:0010559 regulation of glycoprotein biosynthetic process biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0030133 transport vesicle cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0045202 synapse cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0098793 presynapse cellular_component
GO:0030658 transport vesicle membrane cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000154602

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075382 lncRNA downstream 375764 30865653 ~ 30890495 (-) False XLOC_037918
TCONS_00075385 lncRNA downstream 375818 30879720 ~ 30890441 (-) True XLOC_037918
TCONS_00075384 lncRNA downstream 375863 30879720 ~ 30890396 (-) False XLOC_037918
TCONS_00075383 lncRNA downstream 388043 30876643 ~ 30878216 (-) True XLOC_037919
TCONS_00074435 lncRNA downstream 697731 30565834 ~ 30568528 (-) True XLOC_037914
TCONS_00074459 lncRNA upstream 483631 31755081 ~ 31780466 (-) True XLOC_037928
TCONS_00074460 lncRNA upstream 487183 31758633 ~ 31763256 (-) False XLOC_037929
TCONS_00075387 lncRNA upstream 526395 31797845 ~ 31810047 (-) True XLOC_037930
TCONS_00074988 lncRNA upstream 786256 32057706 ~ 32058334 (-) True XLOC_037932
TCONS_00074464 lncRNA upstream 824881 32096331 ~ 32105779 (-) False XLOC_037933
TCONS_00074441 mRNA downstream 130251 31134907 ~ 31136008 (-) True XLOC_037922
TCONS_00074440 mRNA downstream 157974 31105389 ~ 31108285 (-) True XLOC_037921
TCONS_00074439 mRNA downstream 175666 31089649 ~ 31090593 (-) True XLOC_037920
TCONS_00074438 mRNA downstream 458186 30800876 ~ 30808073 (-) True XLOC_037917
TCONS_00074434 mRNA downstream 689737 30558508 ~ 30576522 (-) False XLOC_037914
TCONS_00074445 mRNA upstream 2658 31274108 ~ 31278048 (-) False XLOC_037925
TCONS_00074448 mRNA upstream 223491 31494941 ~ 31525126 (-) False XLOC_037926
TCONS_00074447 mRNA upstream 223491 31494941 ~ 31525126 (-) False XLOC_037926
TCONS_00074449 mRNA upstream 226451 31497901 ~ 31525040 (-) False XLOC_037926
TCONS_00074450 mRNA upstream 244525 31515975 ~ 31524907 (-) False XLOC_037926
TCONS_00074442 other downstream 78400 31187738 ~ 31187859 (-) True XLOC_037923
TCONS_00074437 other downstream 558305 30707839 ~ 30707954 (-) True XLOC_037916
TCONS_00074436 other downstream 586241 30677470 ~ 30680018 (-) True XLOC_037915
TCONS_00074423 other downstream 969468 30296675 ~ 30296791 (-) True XLOC_037905
TCONS_00074403 other downstream 1158326 30106070 ~ 30107933 (-) True XLOC_037898
TCONS_00074446 other upstream 2658 31274108 ~ 31314324 (-) True XLOC_037925
TCONS_00074451 other upstream 247304 31518754 ~ 31525029 (-) False XLOC_037926
TCONS_00074461 other upstream 488056 31759506 ~ 31761529 (-) False XLOC_037929
TCONS_00074471 other upstream 929200 32200650 ~ 32205543 (-) False XLOC_037937
TCONS_00074475 other upstream 988364 32259814 ~ 32264658 (-) False XLOC_037940

Expression Profile

//