RNA id: TU86352


Basic Information

Item Value
RNA id TU86352
length 371
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G64489
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 25506164 ~ 25506568 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaagtctgtattactatcattgtggggacatatcattgacataatgcattccctagccccttaccctaaccttaaccatcacaactaaatgcctaaccttaacccttaccctcaccctaaccataacctaattctaaccctagtcctaaaaccaagtcttaaccctcaaacagccctttaaactcgtggggaccagcattttggtccccacgaggctgtgcagaccccacaaggatagtaaaacaggtacacacacacacacacacacacacacacacacacacacacacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86313 lncRNA upstream 203244 25259716 ~ 25302920 (+) True G64450
TU86234 lncRNA upstream 295994 25209924 ~ 25210170 (+) True G64392
XR_005639412.1 lncRNA upstream 465266 25034709 ~ 25040898 (+) True LOC120560056
TU86090 lncRNA upstream 613647 24876562 ~ 24892517 (+) True G64287
TU86081 lncRNA upstream 643434 24860249 ~ 24862730 (+) True G64279
XR_005639499.1 lncRNA downstream 41455 25548023 ~ 25552264 (+) True LOC120560635
TU86357 lncRNA downstream 41583 25548151 ~ 25551497 (+) False LOC120560635
TU86363 lncRNA downstream 46371 25552939 ~ 25555781 (+) True G64495
TU86472 lncRNA downstream 156459 25663027 ~ 25663385 (+) True G64578
TU86493 lncRNA downstream 190495 25697063 ~ 25699784 (+) True G64592
XM_039803025.1 mRNA upstream 61024 25336024 ~ 25445140 (+) True sema6a
XM_039803026.1 mRNA upstream 61024 25336024 ~ 25445140 (+) False sema6a
XM_039803027.1 mRNA upstream 61024 25336024 ~ 25445140 (+) False sema6a
XM_039803497.1 mRNA upstream 246995 25233215 ~ 25259169 (+) True hsd17b4
XM_039803496.1 mRNA upstream 246995 25233498 ~ 25259169 (+) False hsd17b4
XM_039804190.1 mRNA downstream 61136 25567704 ~ 25573107 (+) True cdo1
XM_039804191.1 mRNA downstream 61137 25567705 ~ 25573107 (+) False cdo1
XM_039804192.1 mRNA downstream 61997 25568565 ~ 25573107 (+) False cdo1
XM_039803262.1 mRNA downstream 94588 25601156 ~ 25622051 (+) True LOC120560598
XM_039804389.1 mRNA downstream 119436 25626004 ~ 25645818 (+) False spef2
XR_005639471.1 other upstream 671533 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other upstream 671544 24823719 ~ 24834620 (+) False cdc14b
TU85875 other upstream 1812873 23692662 ~ 23693291 (+) True G64108
TU85622 other upstream 2575959 22929899 ~ 22930205 (+) True G63905
XR_005639510.1 other upstream 3907365 21588876 ~ 21598799 (+) False LOC120560787
TU86491 other downstream 178404 25684972 ~ 25696570 (+) False LOC120561182
TU86550 other downstream 407814 25914382 ~ 25915529 (+) False LOC120560031
TU86770 other downstream 906301 26412869 ~ 26414597 (+) True G64814
TU86790 other downstream 987767 26494335 ~ 26496386 (+) False c6h22orf39
TU86791 other downstream 987767 26494335 ~ 26496328 (+) False c6h22orf39

Expression Profile