RNA id: XR_005639499.1


Basic Information

Item Value
RNA id XR_005639499.1
length 2222
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id LOC120560635
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 25548023 ~ 25552264 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCCCTCCGCGGGAGCGCGCGCGTAAGCCTCGGTCGCCCAGTTTATATAcccatttttatataaaatatccCATTTTTATATAAAAGCAACATTCTAGTTGCTTTTATTacgggttttttttttagatatcttCGAGCAGCAACCCAATAACGGATTACCGCATCAACCTTGTCACCAAAAGGTTATGTATGCCTCAAAATGACTTAATTTCATTTGGGTTGTAGGCCTATACCAGCTCCCACAGCAACATGTTTGTACATGGGAGAAGGAGGTTCTCGCTGACCAGCAGCTCTGTATTCAGGAGGGGAACTCCAGTCTGGACTAAGAGGACCCAGAGTCTCCACAGATTAAAGAACAGGAGGAAGAGCAGCTTGTACTAAAGCAGGAGACTGATACCTTTATGTTGACTCCTATGTGTGTGACCACCAGCTCCTCTCTTCCAACCATCTTGTAGCTGAGGATCAAGAAATGCTGATCCAAATCCAAAGAACAGACATCCCAAACGCAGAAGTCACAGTAGCAAGCTATACAACTCTACCATGTCAAAAAATACTCTGATATACTACTGAGTAATACTCACAAAGGtaaaaagtctttaaaatgtGACGAATGTGGCAAAGCTTTTATCTGTTTGTCAAAATGTAAAGCACActtgagaatccacacaggtgagaagcatTTGTGTGTGAAACATGGGAAAGATTTCATACAGAGTGGTCAATTGAAATAACACGTAAGAACGCACACAGGCGAGAAGCCATATTTGTACAAAACATGTGGGAAAAATTTCAGAGGTGGCAGTGCCTTGAAGGTCCACATGAGAatgcacacaggtgagaagcagTATACTTGTGAAACATGTGGGAGAGCTTTCAGACAGGGTGGTGAATTGATACTCCACATGAGAAtacacacaggtgagaagccatTTGTTTGCAGCACCTGTGGGAAAAGATTCAGTCTGACATATGAATTGAAAAGCCATACAAGAATCCATACAGGTGAAAAACCATGTTTGTGCAAAACATGTGAGAGAGGTTTCAGAATGAGTCGTGACTTGGCAGCACACAGGAGAAGAACCAGTGAAAATATATTGTTGTAAGGAAGTAGTACATTGTCAACAATGCTATGAAGTTTTGGTGAACTCACATCGTTTTATTTCCCTTCATATTACAGCattattgacatttttgttaGCAACAGTATCTCTTTGAAAAGTCTTTGTTGCACAGTGAGTTTATAGTTCCTACAAATGTTTGACCTGCTAAAtgaatattgttttttaaaacatttcatacaCCACCATGTCCACCTCAGTTATGAGTGGATTGTAAAAagggctttattggcatgaaagtttcaaaaacaatgttgccaaagcatcaaaATACAATTTGTCCAAATATCCAGACAGTACACAATAAACAGTATTATGAACATTAACACAACATCCTGCCaactagttgttttttttgtctgaaacatgtaatttaatttgatatttatatattttgtatttgcatCAACTTGATATAATTTTTAGTTGTTTTAGGTTTTAGAGGTGACACACcatcatacattttaaatgatgtatTATATGGTAATAGAAACGATCAGTGCCCAATGGAAGGTGGGCAacaaaatgctgttttctcatcttatgtattgtattttaacaaTAAATTGCCATATGTTTAATAACATTTTGCATGCAGAGGAAATAGTTCAAAAGGACATCAGTTAAATGTAGTAGTCCCCAttccaagaaaaaaataactcaaTTCCACTGTTGGAACTTTAGTGTGACATCCAGCAGAAGAAAACAACACAAGCGCAAGTAGCGATATCAGCTGTATTATCCGCAAAATGTACTTACGGAATCAAAAGGCAAGAGGCTACCACTTTTAAGATGGCTGTGTGACCATGGCTGTGGCCATTAAAACATGTAAGAGCATTTCATTGTTGTAGTTTGTCAGTGTGGTAGATAAGTAGTATAGTACTGCATTATATATAAgcatatatgtatttatatactgtataaaaagtAACTATAAGTGttgaataaatgtagtggagtaaaaagtacaatatttcctctGAAATGTAAAAGTTATAGTAGAAGTAGAATGAaccataaaatggaaatactggAAGTACCAGTATGTCAAATTGTACTGTTAAACAGtatttcacaaaaataaaatgtactttgttacattcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86352 lncRNA upstream 41455 25506164 ~ 25506568 (+) True G64489
TU86313 lncRNA upstream 245103 25259716 ~ 25302920 (+) True G64450
TU86234 lncRNA upstream 337853 25209924 ~ 25210170 (+) True G64392
XR_005639412.1 lncRNA upstream 507125 25034709 ~ 25040898 (+) True LOC120560056
TU86090 lncRNA upstream 655506 24876562 ~ 24892517 (+) True G64287
TU86363 lncRNA downstream 675 25552939 ~ 25555781 (+) True G64495
TU86472 lncRNA downstream 110763 25663027 ~ 25663385 (+) True G64578
TU86493 lncRNA downstream 144799 25697063 ~ 25699784 (+) True G64592
XR_005639536.1 lncRNA downstream 161646 25713910 ~ 25747889 (+) True LOC120560927
TU86515 lncRNA downstream 236193 25788457 ~ 25795441 (+) True G64607
XM_039803025.1 mRNA upstream 102883 25336024 ~ 25445140 (+) True sema6a
XM_039803026.1 mRNA upstream 102883 25336024 ~ 25445140 (+) False sema6a
XM_039803027.1 mRNA upstream 102883 25336024 ~ 25445140 (+) False sema6a
XM_039803497.1 mRNA upstream 288854 25233215 ~ 25259169 (+) True hsd17b4
XM_039804190.1 mRNA downstream 15440 25567704 ~ 25573107 (+) True cdo1
XM_039804191.1 mRNA downstream 15441 25567705 ~ 25573107 (+) False cdo1
XM_039804192.1 mRNA downstream 16301 25568565 ~ 25573107 (+) False cdo1
XM_039803262.1 mRNA downstream 48892 25601156 ~ 25622051 (+) True LOC120560598
XM_039804389.1 mRNA downstream 73740 25626004 ~ 25645818 (+) False spef2
XR_005639471.1 other upstream 713392 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other upstream 713403 24823719 ~ 24834620 (+) False cdc14b
TU85875 other upstream 1854732 23692662 ~ 23693291 (+) True G64108
TU85622 other upstream 2617818 22929899 ~ 22930205 (+) True G63905
XR_005639510.1 other upstream 3949224 21588876 ~ 21598799 (+) False LOC120560787
TU86491 other downstream 132708 25684972 ~ 25696570 (+) False LOC120561182
TU86550 other downstream 362118 25914382 ~ 25915529 (+) False LOC120560031
TU86770 other downstream 860605 26412869 ~ 26414597 (+) True G64814
TU86790 other downstream 942071 26494335 ~ 26496386 (+) False c6h22orf39
TU86791 other downstream 942071 26494335 ~ 26496328 (+) False c6h22orf39

Expression Profile