RNA id: XM_039804178.1


Basic Information

Item Value
RNA id XM_039804178.1
length 2618
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC120561182
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 25684964 ~ 25696576 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAACGTCCTGAAGAAAGGAGACTCAAGTGAATGAGCGTTTGGGCTGCACCGGGAAGAGAACCAGCGTTTCAAAACAAAGGACAGGGACAGCTTCTTCACCTTTGCGCCTGCAAAATCTCTCCACGTTGACTTCCCgTGTGCTTTTCAGATGGTACCATGGCTGAGGGAAGCTGCTTCGGTGCATTGTAGCTGTTAGGGAtgaccagagaagaagaagagggaaaaGCAAAGAAGAAAGTATTGTGAGAGAAGGGAAAACATCTGCTCAGAGAGGATAAGATCAGAACAGGGAATCTACTGGACCTTTCTCTTTGTAAGGAAAGGAATTTAAACTCTCCAGTATCAGTGCTCTGTCCCTTTTGAAGggctttatattttttatttaattttttatttgtattggtTGTTACCTTCTAAGAAAGAGTTAACACCATGTGCCATGTTATTGTAACATGCCGCTCCATGCTCTGGACACTACTCAGTATTGTAGTGGCCTTTGCTGAGCTCATTGCCTTCATGAGCCCTGATTGGCTTCTGGGATTCCCCCGGTCGGACTCCAGTGCGAGCGGGGCGGGAGTGGACTCCGGGGAGTACCGGCCGTCTCTCGGCCTCTACAGCCGCTGCCTTCGTGTCGGGGCCCGGGGAGTAGGGGTGAGCTGCGGGCCCTACGCTGGGACATTTGGAGAAGTGGCCAGTGGCTTCTGGCAGGCTGCCATGTTGTTTCTGGCAGCAGGGGTGTTAGTGCTAGGAGGAGTAGCCTGTATCTCCATCTTCAGCCTGTGCTTCCAGAGCATCCTGAAGAAGAGCATATTCAACATCTGTGGACTGCTCCAGGCTATCGCAGGCCTGTTGCTGATGGTGGGCCTCATGCTGTACCCTGCCGGTTGGGGTTCAGAGAAGGTGATCAGCTACTGTGGCGCTGAGACCTTGCCCTTTAGGCCGGCTCTGTGTTCACTCGGCTGGGCGTTCTACGCAGCGATAGGAGGAACTTTGGGATCCTTTCTGTGTGCCGTTTTGTCTGCACAGGCTGAGATTGCCACCTCCAGCGATAAGGTTCAGGAGGAGATTGAAGAGGGAAAGAGTCTGATCTGCCTGCTCTGAGCCTTCAGAAACGTTGGGAAACTCCAGGAAATCATCCTTGATGTAATGTCTCTGATATGGCCACTTATAGATCTCAGTGGAGGGAGGACAGACATTGTGTTGAGTGATTTTCTTCATAAAAATAATCAGCTGGTTGTTAAGAAGATAGAAGCCTCGGTAACCACTTTCTAAATCGTAAGGCATGGTGTTCATGCCTAAATGATGATTGATAAAACTGCCAAAAAGGCTACAGCAGCATTACATGTAGTCTTAACCAATGTTTTTGACCAAGATacagtttatttttgtaaaatatatttcCTTAAACAAACCACTGTACTGTAAAAGCAGGAGATTAGTTAAAGAAATTGGTAGTGGATGTGTTGTTAGCGTTATTGTAGACAGGTTAAACACTGCCAGTCAAacagtgtgtatgtttgtaacGTCATTATAATGTTCCTTCACATGGTTCACCTGCAAACCTCAACAAACCACTGAACacaagcaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcacacaaaCTGTTGAGGTTCTCTAAATGTCCATGTGCTCTGATTGTATGGCACAGCAGGACAGCACGACTCTCTAGCTAACTTTACATGTGCCACTTAAGGGATAGTTCACTTTAAAGGGAGTTTCCCCTGTTAGATTGTGTGTGGGTCTCTTGCAGCTTATTAACTAGCGGAGTGTGTGAACAGAGCTGAAAAGGAACAGAGATTTGCCATATGTTTCACTGGTCCGAACTTTGAGGGGATGTTTGCTCACAGCCAGATAAAGCAGGCTGCACCAGAGCTTTTCATGGGTTACCTGACACACCATAAAGACACAATCTGGCTTTGTAAAGATATCCAAGACACAAACGAGTTGATTAAAAATTCAAAAGGTGTCTGTGGAGTCTTTGCTAGATGAAATGGGTAATTAGTGTGACCATTTATTAAGAGAGAcctctttgtttgtttggtaCTTTTGAAAATAACCTGATGTTGTCTTTTGCACTTTGTCCTTAATTCATTTCACATTGCTTCATATTCTGTTCACGTGTTTTCATTTTCCCAACCATGCTTCATTAAGTTGCAGTAAATGTAACATCATGGGATTGCTTTTATTCATTGTAGATGAGATGTGCAATAATTCAACTATAGTGTTTTTGCTGTGAGAGTGAGTGgacagagaggatgagacatttctaaactGTCTGTGCTTAAATTAATATGTTGACTGTCtgctgtttttgttacattaacAAAAGAGTAACAGCATCCGTGGCACATTGTATGATACTGCATGTGTGAGAGGTTAAGTGTTAGGAGAGATTGTCTCTGTATTTTGTACTCAAATAAACCAGGCCTTTTTTATTAATTCTATCGGT

Function

GO: NA

KEGG:

id description
K23893 LHFPL; LHFPL tetraspan subfamily member protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86472 lncRNA upstream 21579 25663027 ~ 25663385 (+) True G64578
TU86363 lncRNA upstream 129183 25552939 ~ 25555781 (+) True G64495
XR_005639499.1 lncRNA upstream 132700 25548023 ~ 25552264 (+) True LOC120560635
TU86357 lncRNA upstream 133467 25548151 ~ 25551497 (+) False LOC120560635
TU86352 lncRNA upstream 178396 25506164 ~ 25506568 (+) True G64489
TU86493 lncRNA downstream 487 25697063 ~ 25699784 (+) True G64592
XR_005639536.1 lncRNA downstream 17334 25713910 ~ 25747889 (+) True LOC120560927
TU86515 lncRNA downstream 91881 25788457 ~ 25795441 (+) True G64607
XR_005639405.1 lncRNA downstream 142560 25839136 ~ 25843093 (+) True LOC120560032
TU86551 lncRNA downstream 219368 25915944 ~ 25916892 (+) True G64643
XM_039803612.1 mRNA upstream 25503 25655685 ~ 25659461 (+) True LOC120560772
XM_039803611.1 mRNA upstream 31808 25647115 ~ 25653156 (+) True LOC120560771
XM_039804387.1 mRNA upstream 38487 25626005 ~ 25646477 (+) True spef2
XM_039804390.1 mRNA upstream 38487 25626005 ~ 25646477 (+) False spef2
XM_039804388.1 mRNA upstream 38487 25626005 ~ 25646477 (+) False spef2
XM_039802203.1 mRNA downstream 60512 25757088 ~ 25762906 (+) True LOC120560092
XM_039802204.1 mRNA downstream 60512 25757088 ~ 25762906 (+) False LOC120560092
XM_039802030.1 mRNA downstream 77802 25774378 ~ 25784037 (+) True LOC120559963
XM_039802136.1 mRNA downstream 217703 25914279 ~ 25915577 (+) True LOC120560031
XM_039802758.1 mRNA downstream 229524 25926100 ~ 25928596 (+) True LOC120560359
XR_005639471.1 other upstream 850333 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other upstream 850344 24823719 ~ 24834620 (+) False cdc14b
TU85875 other upstream 1991673 23692662 ~ 23693291 (+) True G64108
TU85622 other upstream 2754759 22929899 ~ 22930205 (+) True G63905
XR_005639510.1 other upstream 4086165 21588876 ~ 21598799 (+) False LOC120560787
TU86550 other downstream 217806 25914382 ~ 25915529 (+) False LOC120560031
TU86770 other downstream 716293 26412869 ~ 26414597 (+) True G64814
TU86790 other downstream 797759 26494335 ~ 26496386 (+) False c6h22orf39
TU86791 other downstream 797759 26494335 ~ 26496328 (+) False c6h22orf39
TU86793 other downstream 797759 26494335 ~ 26496261 (+) False c6h22orf39

Expression Profile