RNA id: TU86549


Basic Information

Item Value
RNA id TU86549
length 457
lncRNA type sense_over
GC content 0.45
exon number 3
gene id LOC120560359
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 25926087 ~ 25928596 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aaagaaagagagactgctgtccggaggataatcagttgagatcgtgtgtgtgcgtccttgagaactCATGTGGATTGACTTGCTACCACTGTCAAGGCAAGAACTGCGCAGACAAGTTAACTTGTCCTATTGGCTTAGACCGTTGTTCCTCCATCGAATTGAACGGTGTCATTGTGAAGAGCTGCATGACGAGTGAACTATGTCGCAGCCCCATAAAGTGCTGTGAGAGCGACTTGTGTAACAGCGCCGTACCCACTGGTTCCAGTGTCCTCCTCCTGCTGGTTTCCTCAGCCATCATCACACTCTTTCTCTAAGGCTCTGGAGCAGCTACAGCTTAAGAACACTTCTCTTACTCAATTGGTACAACTCAAGAAGAATAACCACATTTTCAAGATGTAAAAGCTGTGAATGACTGCAGATCAatgtttgtttaataaaaacacaatatgaAAAACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86572 lncRNA upstream 3699 25922163 ~ 25922388 (+) True G64663
TU86567 lncRNA upstream 7994 25917765 ~ 25918093 (+) True G64658
TU86566 lncRNA upstream 8611 25917187 ~ 25917476 (+) True G64657
TU86551 lncRNA upstream 9195 25915944 ~ 25916892 (+) True G64643
XR_005639405.1 lncRNA upstream 82994 25839136 ~ 25843093 (+) True LOC120560032
TU86587 lncRNA downstream 332 25928924 ~ 25929158 (+) True G64677
TU86705 lncRNA downstream 375258 26303850 ~ 26321956 (+) True G64764
TU86725 lncRNA downstream 443042 26371634 ~ 26383843 (+) False nsd3
TU86797 lncRNA downstream 565743 26494335 ~ 26496987 (+) True c6h22orf39
TU86807 lncRNA downstream 583873 26512465 ~ 26514759 (+) True G64834
XM_039802136.1 mRNA upstream 10510 25914279 ~ 25915577 (+) True LOC120560031
XM_039802030.1 mRNA upstream 142050 25774378 ~ 25784037 (+) True LOC120559963
XM_039802203.1 mRNA upstream 163181 25757088 ~ 25762906 (+) True LOC120560092
XM_039802204.1 mRNA upstream 163181 25757088 ~ 25762906 (+) False LOC120560092
XM_039804178.1 mRNA upstream 229511 25684964 ~ 25696576 (+) True LOC120561182
XM_039802766.1 mRNA downstream 11184 25939776 ~ 25949337 (+) False LOC120560362
XM_039802763.1 mRNA downstream 11272 25939864 ~ 25949337 (+) False LOC120560362
XM_039802770.1 mRNA downstream 11272 25939864 ~ 25949337 (+) False LOC120560362
XM_039802769.1 mRNA downstream 11272 25939864 ~ 25949337 (+) False LOC120560362
XM_039802771.1 mRNA downstream 11272 25939864 ~ 25949337 (+) False LOC120560362
TU86550 other upstream 10558 25914382 ~ 25915529 (+) False LOC120560031
TU86491 other upstream 229517 25684972 ~ 25696570 (+) False LOC120561182
XR_005639471.1 other upstream 1091456 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other upstream 1091467 24823719 ~ 24834620 (+) False cdc14b
TU85875 other upstream 2232796 23692662 ~ 23693291 (+) True G64108
TU86770 other downstream 484277 26412869 ~ 26414597 (+) True G64814
TU86790 other downstream 565743 26494335 ~ 26496386 (+) False c6h22orf39
TU86791 other downstream 565743 26494335 ~ 26496328 (+) False c6h22orf39
TU86793 other downstream 565743 26494335 ~ 26496261 (+) False c6h22orf39
XR_005639500.1 other downstream 685645 26614237 ~ 26642481 (+) False cltcl1

Expression Profile