RNA id: XM_039802758.1


Basic Information

Item Value
RNA id XM_039802758.1
length 638
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC120560359
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 25926087 ~ 25928596 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctgctgtccggaggataatcagttgagatcgtgtgtgtgcgtccttgagaactTCAGATGTCTACATGATCGACTGGTGGTCGACCAAAGTGATCACTTTGGGAGGAGCCGTTGGGAAGATAAAACTGAAAGAAGACTAGCTTGGACTAGTTCTTTTCTCAGGGTTGGACAAAAGTCTAATTTTCTCTCCGTTCACGATGCAGTTTTATGGAGCTCTGATCCTGTTTTTGACTCTGTCTGCAGCATGTGGATTGACTTGCTACCACTGTCAAGGCAAGAACTGCGCAGACAAGTTAACTTGTCCTATTGGCTTAGACCGTTGTTCCTCCATCGAATTGAACGGTGTCATTGTGAAGAGCTGCATGACGAGTGAACTATGTCGCAGCCCCATAAAGTGCTGTGAGAGCGACTTGTGTAACAGCGCCGTACCCACTGGTTCCAGTGTCCTCCTCCTGCTGGTTTCCTCAGCCATCATCACACTCTTTCTCTAAGGCTCTGGAGCAGCTACAGCTTAAGAACACTTCTCTTACTCAATTGGTACAACTCAAGAAGAATAACCACATTTTCAAGATGTAAAAGCTGTGAATGACTGCAGATCAatgtttgtttaataaaaacacaatatgaAAAACACCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86572 lncRNA upstream 3712 25922163 ~ 25922388 (+) True G64663
TU86567 lncRNA upstream 8007 25917765 ~ 25918093 (+) True G64658
TU86566 lncRNA upstream 8624 25917187 ~ 25917476 (+) True G64657
TU86551 lncRNA upstream 9208 25915944 ~ 25916892 (+) True G64643
XR_005639405.1 lncRNA upstream 83007 25839136 ~ 25843093 (+) True LOC120560032
TU86587 lncRNA downstream 328 25928924 ~ 25929158 (+) True G64677
TU86705 lncRNA downstream 375254 26303850 ~ 26321956 (+) True G64764
TU86725 lncRNA downstream 443038 26371634 ~ 26383843 (+) False nsd3
TU86797 lncRNA downstream 565739 26494335 ~ 26496987 (+) True c6h22orf39
TU86807 lncRNA downstream 583869 26512465 ~ 26514759 (+) True G64834
XM_039802136.1 mRNA upstream 10523 25914279 ~ 25915577 (+) True LOC120560031
XM_039802030.1 mRNA upstream 142063 25774378 ~ 25784037 (+) True LOC120559963
XM_039802203.1 mRNA upstream 163194 25757088 ~ 25762906 (+) True LOC120560092
XM_039802204.1 mRNA upstream 163194 25757088 ~ 25762906 (+) False LOC120560092
XM_039804178.1 mRNA upstream 229524 25684964 ~ 25696576 (+) True LOC120561182
XM_039802766.1 mRNA downstream 11180 25939776 ~ 25949337 (+) False LOC120560362
XM_039802763.1 mRNA downstream 11268 25939864 ~ 25949337 (+) False LOC120560362
XM_039802770.1 mRNA downstream 11268 25939864 ~ 25949337 (+) False LOC120560362
XM_039802769.1 mRNA downstream 11268 25939864 ~ 25949337 (+) False LOC120560362
XM_039802771.1 mRNA downstream 11268 25939864 ~ 25949337 (+) False LOC120560362
TU86550 other upstream 10571 25914382 ~ 25915529 (+) False LOC120560031
TU86491 other upstream 229530 25684972 ~ 25696570 (+) False LOC120561182
XR_005639471.1 other upstream 1091469 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other upstream 1091480 24823719 ~ 24834620 (+) False cdc14b
TU85875 other upstream 2232809 23692662 ~ 23693291 (+) True G64108
TU86770 other downstream 484273 26412869 ~ 26414597 (+) True G64814
TU86790 other downstream 565739 26494335 ~ 26496386 (+) False c6h22orf39
TU86791 other downstream 565739 26494335 ~ 26496328 (+) False c6h22orf39
TU86793 other downstream 565739 26494335 ~ 26496261 (+) False c6h22orf39
XR_005639500.1 other downstream 685641 26614237 ~ 26642481 (+) False cltcl1

Expression Profile