RNA id: XM_039802136.1


Basic Information

Item Value
RNA id XM_039802136.1
length 622
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC120560031
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 25914279 ~ 25915577 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACAGCGGTGCATGGCTGTCTCAGGGATAATGTGGTCACTTTAGGTGTGACATTATTCAGGTCACATGGGAGAAGGCTTTGTGAGGAAATGCAAATGTTGAAGTTCTGAAAGAAGTTGGTATAAAAGAAGAAGGCTTTTCTCCAGTTCTCCTCTCACTTGGGTGATTAACAATCTGTTTTTCTCTCCGTTCACGATGCAGCTTTATGGAGCTCTGATCCTGTTTATGACTCTGTCTACAGCATGTGGATTAAGATGTTACACATGCACAGCCACTGATCCTAAATCCTGCACTGACACCAAATCTTGTCCTGTCATCTTCAACCGCTGTTTCTCTCTCAGAATAGACGGTTATAACATGGTTACCAAGGGCTGCCAAACCTCCTTAGCATGCGTAGGTGCCATGGCTTGCTGTGAAGGGAACTTGTGTAACAGTGTCATACCAACTGGTCCCTGTGGCATCCTCCTGCTGGTATCTTCAGCCATCATCACACTCTTCCTGTGAGGCTCTGGGAGTTTGTTATTTCCATGCTGCACTTTTTTCTGACTCAATTTGTACAACTGAAGAAGAATAAAGAACTTCTCACTGCAAAAACTCAATTTCTCAGTAAGTGAGATAATCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639405.1 lncRNA upstream 71186 25839136 ~ 25843093 (+) True LOC120560032
TU86515 lncRNA upstream 118838 25788457 ~ 25795441 (+) True G64607
XR_005639536.1 lncRNA upstream 166390 25713910 ~ 25747889 (+) True LOC120560927
TU86493 lncRNA upstream 214495 25697063 ~ 25699784 (+) True G64592
TU86472 lncRNA upstream 250894 25663027 ~ 25663385 (+) True G64578
TU86551 lncRNA downstream 367 25915944 ~ 25916892 (+) True G64643
TU86566 lncRNA downstream 1610 25917187 ~ 25917476 (+) True G64657
TU86567 lncRNA downstream 2188 25917765 ~ 25918093 (+) True G64658
TU86572 lncRNA downstream 6586 25922163 ~ 25922388 (+) True G64663
TU86549 lncRNA downstream 10510 25926087 ~ 25928592 (+) False LOC120560359
XM_039802030.1 mRNA upstream 130242 25774378 ~ 25784037 (+) True LOC120559963
XM_039802203.1 mRNA upstream 151373 25757088 ~ 25762906 (+) True LOC120560092
XM_039802204.1 mRNA upstream 151373 25757088 ~ 25762906 (+) False LOC120560092
XM_039804178.1 mRNA upstream 217703 25684964 ~ 25696576 (+) True LOC120561182
XM_039803612.1 mRNA upstream 254818 25655685 ~ 25659461 (+) True LOC120560772
XM_039802758.1 mRNA downstream 10523 25926100 ~ 25928596 (+) True LOC120560359
XM_039802766.1 mRNA downstream 24199 25939776 ~ 25949337 (+) False LOC120560362
XM_039802763.1 mRNA downstream 24287 25939864 ~ 25949337 (+) False LOC120560362
XM_039802770.1 mRNA downstream 24287 25939864 ~ 25949337 (+) False LOC120560362
XM_039802769.1 mRNA downstream 24287 25939864 ~ 25949337 (+) False LOC120560362
TU86491 other upstream 217709 25684972 ~ 25696570 (+) False LOC120561182
XR_005639471.1 other upstream 1079648 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other upstream 1079659 24823719 ~ 24834620 (+) False cdc14b
TU85875 other upstream 2220988 23692662 ~ 23693291 (+) True G64108
TU85622 other upstream 2984074 22929899 ~ 22930205 (+) True G63905
TU86770 other downstream 497292 26412869 ~ 26414597 (+) True G64814
TU86790 other downstream 578758 26494335 ~ 26496386 (+) False c6h22orf39
TU86791 other downstream 578758 26494335 ~ 26496328 (+) False c6h22orf39
TU86793 other downstream 578758 26494335 ~ 26496261 (+) False c6h22orf39
XR_005639500.1 other downstream 698660 26614237 ~ 26642481 (+) False cltcl1

Expression Profile