RNA id: XM_039803586.1


Basic Information

Item Value
RNA id XM_039803586.1
length 7237
RNA type mRNA
GC content 0.51
exon number 24
gene id nsd3
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 26359120 ~ 26383843 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTGAGCTGCAGGAGAGACCGACCACCAGGcctggagtaaaaaaaaagcagggtgtctTTGTTAAaccagagaaagaaagagctaGAGAttgttattatgattattaGTATTTAGAATACTGCACACAGGAGGACGGCGAGAAATGGACATATCTATCTGTAGCATTCTACTAAATGCTCCAGTCCCTACTCTGAGGAAGAGCCAAGCTTTGGGATTGGGCAGCGACCAGATAGCGTAAcaacccctcctcctctctgttgaGAATTGCGTTAAAACGAAAAAGGAAAAGGCCTGCGCTTTTTCTATATTACAggattgttttgactttttttctccttaTATATTAAACGAGGAACCGTTGCTGGCTGGTGTATGTGTTTAGAATGGGACACGCTGAAGGTCCAGTCAAAGAAAAAGACAGTTAAGGATGCAGGAGCCCAACAATGgatttctccttctctttcatgCAAGGGATCATGGGAAATACAATTCAGCAACCCCCTCAGCTCATTGACTCAGCCAACATCAGACAGGAAGGCACCTGTGACACCGGCAGTGATCCAGGCGAGGATGGTGGTCCCTCCTACGATGCTGCCCTGGATGCAGAGTTTTCCTACCCGCCGCCAGCCTCGGAGGACATGTCGCAGGTCACCAACGGCTACCCGCCTGGTCTGGGCATGTACGAGCCGCAGGCCAAGTTCTCCATGTACTCGCAGTTCCCCAACGGCTCGGCTAACGGCTACGGGGCCATACGGAGCTACGGAGATCACAGTCTCATGCCAGGGGAGGGGACGGTCCTGAGAGGCCCGGGTCTCCAGGAGAGACCTTTGTCTCCTGTGTCCCCCCCTCTGCCCACACATCACCCACAcctccaccaccatcatcatcaccaccacgcGCACCTCTTCCACTCAAACCCACCTCATATACAAACCCACCCGCACCCACAGAGTCCTCTGCCGCCCCCTCTGCCCTCCCAGCACCACATGCCCCATACACCTCACATCATGACCCAcactctcccccctcctcccccattAATCCTGCCTTCCTCTAgtcctcccccctcccttgtGGACAGTACCCCTTCTTCTCAATCCTCCCACTCCATGTCCAACACCCCTAGTGGGGTGCTGAAAAAAACCAGCTCTCCCGAGATCAAGCTGAAGATCATAAAGACGTACCAGAATGGGAAAGAGCTGTTTGAATCTGCGCTGTGTGGGGACCTGCTGCAGGAACTGCAGAAGGAGTCTCAGAAGAACGAGGCCACTCAGATGCAGCGCAGACatgagaggaagaaggagaagaggaaaaagagtGTGAGGCTGCAGCTGCAGGTCCAGGAACAGAACCTGGACCAGAGCCAAGCAGAGGCAGGTAACATGGAGCAGACAGAGGACATCCACATCCAGCCCCAGCCAATAGAAACACCGCCAGCTCAGACAGAGAAGCCTCAGAAGACTGTTATCAAAACTGAACCAAAGACCCCGAAGGTTCCAAAAGTCCATCATCCATCAGTGATCCAGGAGACGGGCTTCTGTAAGGAGTTTGTGATAGGAGATCTGGTATGGTCCAAGGTGGGCACCTACCCCTGGTGGCCCTGCATGGTCTCCTCTGACCCACAGATGAAGGTCCACACTCGCATCAACACCAGAGGTCACAGGGAGTATCACGTCCAGTTCTTTGGCAGTGTTGCTGAGCGAGCGTGGATCCATGAGAAGAGGATAGTCCTTTACCAGGGAAAGCAACAGTTTGATGACCTTCAAGCTGAGACTCTGCGCAAGGCCACAAATCCTGTAGAAAAAAGCAAACTCCTGAAGCCTATCCCTCAGCGGGAGCGTTCTCAGTGGGAGGTGGGTGTGGGCCATGCTGAGGACGCCTTTGTGATGACGCGGCAGGAGCGAATTGACAACTACACCTTCATCTATGTTGACCCAGACCCACATGAAGGCACGTCCAGCAAGAAACCCAACATCAGAGCTGAGAAACGAAACCGGCGCTCCAGTGGCTCAACCAGTAAGAaggaagagggaggagtgaagtcaccagagagagagcagcCGCCACGAAGGCTGCTGCCACGCAGACAGTGTAGTGTTTCAAACACAGACGACAACACAAACTCCCAGGCCTCAAATGAAGAGAAGAACCAGAGGGGGGACCAGCGTAAAACCAGCTCTCCGAAACAGAGCGCAGGTCGTGATGCACGAGCACAGCCGGACTCGCCGCCACCAGTCAGGGCCTGGAAAACAGCGGCCGCCAGGAAGCTGCTGCCTCTCTCCATCACCATGAAGAGGCTAAATGTGGAGATCACAAAGTGTGACTGGCCTCTCTTGCAGAAAAAAGCAGCTGCTTCTCCAAAAAAAGAccaagaagaagagaaggaggagagagtggagagagaggCCCGGCAGCCCGACCTGGGATACTGTTCACCTGAGGACAGCAGAGCTAAACCTGAGCCCAGtccagaggaggaggatgacggggacgaaggggaggaagagggggaggagaggagaggctcCCCCGCCAGTCGCCGGAGTGAGGAGGGAGGAATGCAGCAGACCTCCTCTCCTGGATCACACCACAGTAGTCCACACGGTTCTCAGGAGAGGAAGCTGCAGCGGCGGTCAGTCAGGAGCAGGTCTGAGTCAGAGAGAGGCAACGATCCCGTCCCTAAGAAGAAAACCAAAAAGGAACAGGCTGAGATGGCTCCTGAGACCACACTGAGGACCGGTTCACAGAAAGGAGCCAGCGAGATCTCAGACGCCTGCAAGCCCCTGAAGAAGCGAAGCAGAGCGTCAACAGATGTGGAGATGGCTTCTTCTCAGTACAGAGACACCTCTGACTCTGACTCTAGAGGCCTAAACGACCCACAGGGTTTATTTGGGAAGAGTCTTGATagtccagcagcagcagatgcaGATGCTTCAGATACTCAGTCTGTGGACTCTGGCTTATCCCGACAGGATGGCAGCACCGGCAAGAGAGACACCGTCTGCCAGatcTGCGAGGTTTACGGAGAGGGTTTGGTGGTGTGTGAAGGTGACTGCAGCAGACAGTTTCACTTGGACTGTCTCGGTGTGACGTCCCTACCTGAAGGCAGATTCACCTGCTTGGAATGCAGAAATGGCAATCATACTTGTTTTAGCTGTAAAACGGCAGGCCGGGAGGTGACACGCTGCTCTGTGTCTGGATGTGGTTGTTACTACCACAAGGACTGTGTCCGTAAACTCCCAGGCACCACCAGCAGTTCGGACGGAGGCTTCTGCTGCCCTCAGCACAGCTGCTCTACCTGCTGCCTGGAGAGAGACCTGCAGCGAGCCAGTAAAGGTCGTCTGATGCGTTGTATCCGCTGTCCCGTGGCCTATCACACAGGAGACAGCTGCGTGGCGGCAGGCAGCGTCGCCCTCACCCATCACATCATGATCTGCAGCAGCCACAGCAGCACCAAGAGGAACGGCCTCCTCACCTCCCCCATCAACGTGGGCTGGTGCTTCCTGTGTGCCAGAGGAGGCAAGTTGCTGTGCTGCGACACATGCCCGGCTTCCTTTCACCCGGAGTGTCTGGAGATGGAGATGCCGGAGGGGGCGTGGTCCTGCAGTGATTGCAGGGCCGGAAAGAAACCTCACTACAAACAAATTGTCTGGGTCAAACTGGGCAACTACAGGTGGTGGCCAGCGGAGATCTGCAACCCTCGCCTGGTGCCATCAAACATTCAGAGCCTTCGCCACGATGTTGGTGACTTCCCCGTCTTCTTCTTTGGCTCCCACGACTACTACTGGATCAACCAGGGCCGCGTCTTTCCCTACGTGGAGAATGACAAGAACTTTGTCACTGGTCAAATCAACATCAATAAAACCTTCAAGAAAGCTCTGGAAGAAGCAGCCCGGCGGTTTCAGGAGCTTAAGGcgcagagggagagcagggagGCTCTAGAGCAGGAACGTAACTCTCGCAAACCCCCACCATACAAATTCATCAAGTCCAACAAACCAGTGGGGAAAGTGCAGGTGCATGTTGCTGACTTGTCAGAAATCCCACGATGCAACTGCAGACCATCGGATGAGCATCCTTGCAGCCTCCACTCTCAATGTCTTAACCGCATGCTGCAGTACGAGTGTCATCCACagGTGTGTCCTGCAGGAGACAACTGTGAGAACCAGTGCTTCTCCAAGCGGCTGTATGCAGCGACAGAAGTGATAAAGACAGACGGCCGTGGCTGGGGCCTCAGGACCAACCAGGCTCTCAGGAAGGGTGACTTTGTGACAGAGTATGTGGGAGAGGTGATCGACTCAGAGGAGTGCCAGCAGCGAATCAAGCGTGCCCATGAAAATCAAGTGGCCAACTTCTACATGCTCACCCTCACCAAGGATCGCGTGATAGACGCCGGCCCAAAAGGAAACTCGTCTCGGTTTATGAACCACAGCTGTAGCCCAAACTGTGAAACGCAGAAGTGGACAGTAAACGGAGACGTTCGCATCGGACTCTTCACCCTTTGTGATATCGATGCTGACACAGAGCTGACGTTCAACTACAACCTGCACTGTGTGGGCAACAGGAGATCGTCTTGTCACTGTGGATCAGACAACTGCTCTGGATTCCTCGGGGTACAGCCAACGAGTGCTGTCGTAATGGAAAAAGAGGAGAAGGCCAGGAATGCCAAGCTGAAGCCGAAGAAGCGGAAGCTGCGGCTGGAAGGCAAACACGTGCACGAATACTTCTGTTTTTGCTGCGGAGAAGGAGGGGAGCTGGTGATGTGTGACAGAAAGGACTGTCCAAAAGCGTACCACCTGCTGTGTCTCAACCTTACCAAACCGCCATAcgGTCGCTGGGAATGTCCGTGGCACGACTGCAGCGTTTGTGGCGCCCCGGCCTCGTCTCTCTGTGACTTCTGCCCTCGCTCGTACTGCCGGGATCACGAGGCGGGGGCGCTCACCTCCTCCGCCCTTGAAGGCCGTCCCTGTTGCTCCAGTCACAACCCCATCAGTCCCCTGGGCTCCAACTCCAGCTCGACCCAGCCGCGCCGCTCCGCTCTGAGCCCCGTCAGCGTCAAAGAGGAGCCGGAGGCGGAGGCGGGCCAGCTGGCCTCAGAGTGACACCGCAGCTCCCTCAATACCTCATTCCCTGTAAAGTGCACTCCTGTTGGCCTCCTGGGCTCCGGTCCACCTCTGATCTGAAGCAGCGCATGACCGGAAGGGAAACACAGTGCTTTTTGACCAGTGCGATGGCCGAGCCGAGACACGCCGATGAACGTCTTGATGCCGTTTGTGGTGAGAGCAACTGGAGTGTCGGCAGGGGAAGTGACCAGGCATCATTGTGCGCCGTTTTCCCTCCTCTCTTGCCATAAAACACCACTACTAACTCTCTACAGCTCGCCTCCGCCCATCGGAGGACCTAGACCACCACCTCAttaggttttcttttttaaatttttacagCTGTGGAAATTTTAAGTGTTGTCATGTTGTCAGATACCGGCACTTTGAAAAACTCAACAAGTGAGGTGGAGGGAGATgtagagagaagaggaggagaagcatGTGTGAAGCTGAACCTCTCCACCGACATGCTGCTCCTCTCCTTGTTTACCTGCTGTAAGCTGCGGTCGGCATCTTGCTCACAGGATGGCTGCACCGAGACGAGCCagcctttctcctcctcctccacagcggaTCATCACTCCAGACGTAAGCCGTCATCGTATTtatctcttcttcttcctcttggagggaaaaaaagggtGGAAATGACCGATTTTGTGCAATTTTTTTCAGGACCACACTACATTCCAACCTTCCTTAGACATGGTTTTAATATACTTCTGAGTATAGATGAATAtaattatatacagtatctatgtttgttcatgtttacaGACAGATTCTCTCACTTCATCTCAGTGAGTGGTgtattatgtttgtttgtttaggtGTTAAGCATTACGCAGACCTCCTTGTGAAAATAGTCCTATTAAGGTGAAATATAATGGTATATAGTGTAATGGTATGACATTACAGAAGTACTTGTGATTTTCATATTGCCAGTCTCACTTGCCATTGTGTACATAATTGGCTCATAATATTGTAAAGTACGCAAAGATCAGGAGGGACGGAGCCTCGCCTCTCTGGTTGTTCCTGGAAGAAGGAaaggctttttttaaatgacaagaCAGatcctttttctttccttttttttggaTAAAGTTCTGTTCCCACATTTCCCCTGAGCAGTTTATGTTATTTGTATTGTAGATGGTGGGGCTCAGCTTGTGATCACTGGTGCTGTCTTAAAGTATTGTTACTCAGCCTTAAGTTTGATTCTGGCTGTGGTAACTACTGCCCAGATGCAGTCTATTTCAGTAACGTTGTGTACTGTGACCGCTTTGATGCTCGTTTTTGTTTCCGTTTTCTGTTTTGCCAAACTTTTCTGAAAAGCACTTTTACACGGCTTGTCGCTACACAATTTAGCTTGGTCATACATATACAGaaatgtatattaaaaaaaacataagacaAGTGTTTCAAAATGGATACCTCTTCTTGTAGTAACGTCGGGATTTAAACTGTGTTGTAACTTTTCCTCTCAGTCAGAAACGTGGTGAGTTGCTGgccatctttttttgtttgtttgtttgttttttataatagAGGAAAGTGGCCTAAATGCTGCTGGTTTCTTTTGGCACAAGCAGGAATGATTGCCAGCCCAGCTCCGTACAGAAAAGTCCACGGTGTCCTCAAGGGGCActtcttctctttttatttaCCACCTGGAGAACATCCTCAAGGCTGGGCTTTATATAAAGACGTAATGGTATAACAACAGTCCAGTCCAGTATGatgtaaaaatacaaacttctGTACAGTGTTTTTAATCGCTCATCTGTCAAATCCaaattttttgtatttattgcaCCACATTTTATAccaatttctttttcaaacacCAGTGCAGTAATTTGTCTCCCTCTTCAACATGGCGTAAGTGAAatagactatttaaaaaaaaaaaaaaacacacacatggggaGTTTTACATGATATATCTGTATTTAGTCATTGCATacgtttgttttaaatttacaTTTGGTGTAATGATTCCACACTTTGGTAACAGCCGCTGCTCATCGACCTGTATCGTGACTCACTGTAATTGGTGTTAATAGCAGTGTGAAGCAGTTAAATATAGGAATGTAAAGTTTCAGTTTCAGAGcagtttttgtgctttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86705 lncRNA upstream 37164 26303850 ~ 26321956 (+) True G64764
TU86587 lncRNA upstream 429962 25928924 ~ 25929158 (+) True G64677
TU86549 lncRNA upstream 430528 25926087 ~ 25928592 (+) False LOC120560359
TU86572 lncRNA upstream 436732 25922163 ~ 25922388 (+) True G64663
TU86567 lncRNA upstream 441027 25917765 ~ 25918093 (+) True G64658
TU86797 lncRNA downstream 112841 26494335 ~ 26496987 (+) True c6h22orf39
TU86807 lncRNA downstream 130971 26512465 ~ 26514759 (+) True G64834
TU86810 lncRNA downstream 150258 26531752 ~ 26533420 (+) True G64836
TU86814 lncRNA downstream 153518 26535012 ~ 26535307 (+) False G64838
TU86813 lncRNA downstream 153614 26535108 ~ 26537695 (+) True G64838
XM_039803671.1 mRNA upstream 30192 26324749 ~ 26328928 (+) True sprn2
XM_039804116.1 mRNA upstream 51492 26295751 ~ 26307628 (+) True LOC120561147
XM_039802421.1 mRNA upstream 67654 26249127 ~ 26291466 (+) False slc23a2
XM_039803887.1 mRNA downstream 2915 26384409 ~ 26394401 (+) True plpp5
XM_039802095.1 mRNA downstream 14304 26395798 ~ 26402661 (+) True cdc45
XM_039804403.1 mRNA downstream 34396 26415890 ~ 26447513 (+) True zgc:63587
XM_039804404.1 mRNA downstream 34406 26415900 ~ 26447513 (+) False zgc:63587
XM_039804406.1 mRNA downstream 78132 26459626 ~ 26470702 (+) True sept5a
TU86550 other upstream 443591 25914382 ~ 25915529 (+) False LOC120560031
TU86491 other upstream 662550 25684972 ~ 25696570 (+) False LOC120561182
XR_005639471.1 other upstream 1524489 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other upstream 1524500 24823719 ~ 24834620 (+) False cdc14b
TU85875 other upstream 2665829 23692662 ~ 23693291 (+) True G64108
TU86770 other downstream 31375 26412869 ~ 26414597 (+) True G64814
TU86790 other downstream 112841 26494335 ~ 26496386 (+) False c6h22orf39
TU86791 other downstream 112841 26494335 ~ 26496328 (+) False c6h22orf39
TU86793 other downstream 112841 26494335 ~ 26496261 (+) False c6h22orf39
XR_005639500.1 other downstream 232743 26614237 ~ 26642481 (+) False cltcl1

Expression Profile