RNA id: TU86797


Basic Information

Item Value
RNA id TU86797
length 1671
lncRNA type sense_over
GC content 0.42
exon number 3
gene id c6h22orf39
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 26494284 ~ 26496987 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTGCTAGCGTAGCTAGCAATGGACCGGTCTGGAGAAGCAGCGTGGAGGGTAATTTATCGTAACATTATACTCCGCCCCGGTCCTGTGATGACTATTGGAGTGAATTCAGACATTGCAAAAGCTTGAGGAATTGTTTTCACCACTATTACACTTATGGTACGTCCCCATCTTGCAAGCAGTGGAAAGAGGACTACCATAACTGCAAAGAGTGGGAGAAACACAGAGGCGCCGAGGCCAAGGACGCCTTGCAGAAGAGTGAAAGGAACAGAGTGGCAGAGCAGAGAAACTTCACCCCAGTATGGGAACTGAGGCGAGACCCTCCCAGAGACTGGCACATGCCCTTGAACCAGGAAAAGCCTCAGGACTCCTGAACTGTCACTATTAATCTGCCATCTGTTCCATGGTGGCCAAAGTAAAATGAAGATTTGAGAATTTAACAAAATCGTTGAGAGCCACTTGCTGGAGAGACAGGGCATCACTCATTGCCATCTCAAATTGTATTTAGTGAGCTTCTGTTTGAAAACAGATGTTAGCGGCAGCCTCTAGTGGCCAATGATGAGTATGACAGCATCTATTCAACCAGAGAATTACAAAGGCAGTGTTGTTTTTCCCGTCATAAATTATTGGTTCTCCAAAGCTTGTGTAAACTGAAGCACAAAGGCTGACTGCACATACAGACTCACTGTAAATGAGTTTTAAGATTaaatgcctttttttgtttagtCTAAGAAAAGGAATATTAGGTTAAAATATGTGCAATGGAAACATTTCATGTATTCCATCTAAGTAATGAAGGACCTGTCATGTGTTGTTTTGATAAGGGTTAAATTAAAAATTGCTGTTTCACAAGAATGTACTAACACCTTTGATGGCATCAAGCAGGAGAGTTGGCCCTAGGACTGTAAAAACCTTATTCTCTTTAACCTGTGCTGTTGATACTCCTCTGTGatgaatatattaaatatattattgatgcaataatgacaaaaaatggCTTTACAGTTTCAACCCATACAGAGTTATGCATTAGCAGTTTTCTGCCTTATGTAATTGATTATGGCTTTAACCTTAACACAACTGAAATTATTCTAAACAACTTggatcaattaaaaaaaaaaaaagtagatttttattttcagcTTCAGTTATGTGTTATACAGAGATGTgaatgtgggggggggggggagaatttaattcataatttcCATGAATACAGAGAAACAACTGACGGGACTATACagttcaagaaaaaaaaaagggtcagcAAAGTGTCCTTCACACCTACACATGCAGGCTTTTAAAAGGCTGCATCTTGCCTTATTGGATCATGACAAATGCAGGCTGCCCCCGCAGCCCTTCCCTGTCGATCACTGTGTGTAGACTTTAGTGATGTTGTTGTATTTCCCATCAGGAGCTTCATACTTGGTCTTTGGTGGTGTGTAGGCAGGACCTTCATGAGTGAAGGGAAACAGAAGGGGGTCTGGCTTTAGTGCTGCCTGGTACAGCTCCTCAGACTCTAACTTCAGCTCCTCCAGCGCCTCCCTCTGTGCCTCTAGAGCAAGTTCAACAGCCTCCACTTCAGCAATGTGCTGCTCCTGCAAGAACAAAGACCGAAGAGCACATCAAATATAGCCCATTAAGTGTAAATGATGAAGGGCAGAGGTCAGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86725 lncRNA upstream 110492 26371634 ~ 26383843 (+) False nsd3
TU86705 lncRNA upstream 172379 26303850 ~ 26321956 (+) True G64764
TU86587 lncRNA upstream 565177 25928924 ~ 25929158 (+) True G64677
TU86549 lncRNA upstream 565743 25926087 ~ 25928592 (+) False LOC120560359
TU86572 lncRNA upstream 571947 25922163 ~ 25922388 (+) True G64663
TU86807 lncRNA downstream 15478 26512465 ~ 26514759 (+) True G64834
TU86810 lncRNA downstream 34765 26531752 ~ 26533420 (+) True G64836
TU86814 lncRNA downstream 38025 26535012 ~ 26535307 (+) False G64838
TU86813 lncRNA downstream 38121 26535108 ~ 26537695 (+) True G64838
TU86815 lncRNA downstream 41281 26538268 ~ 26538541 (+) True G64839
XM_039804409.1 mRNA upstream 771 26489321 ~ 26493564 (+) True ufd1l
XM_039804408.1 mRNA upstream 5934 26476188 ~ 26488401 (+) True dhx37
XM_039804407.1 mRNA upstream 19017 26472774 ~ 26475318 (+) True gp1bb
XM_039804406.1 mRNA upstream 23633 26459626 ~ 26470702 (+) True sept5a
XM_039804403.1 mRNA upstream 46822 26415890 ~ 26447513 (+) True zgc:63587
XM_039804369.1 mRNA downstream 2586 26499573 ~ 26505004 (+) True acaa2
XM_039804313.1 mRNA downstream 9658 26506645 ~ 26511245 (+) True rpl6
XM_039804321.1 mRNA downstream 46039 26543026 ~ 26553731 (+) True vdac3
XM_039804322.1 mRNA downstream 46039 26543026 ~ 26553731 (+) False vdac3
XM_039804323.1 mRNA downstream 46039 26543026 ~ 26553731 (+) False vdac3
TU86770 other upstream 79738 26412869 ~ 26414597 (+) True G64814
TU86550 other upstream 578806 25914382 ~ 25915529 (+) False LOC120560031
TU86491 other upstream 797765 25684972 ~ 25696570 (+) False LOC120561182
XR_005639471.1 other upstream 1659704 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other upstream 1659715 24823719 ~ 24834620 (+) False cdc14b
XR_005639500.1 other downstream 117250 26614237 ~ 26642481 (+) False cltcl1
TU86927 other downstream 148033 26645020 ~ 26657969 (+) False si:dkey-178e17.1
TU87117 other downstream 708247 27205234 ~ 27301770 (+) True G65084
TU87830 other downstream 2853137 29350124 ~ 29351753 (+) False ubac1
XR_005639517.1 other downstream 3689861 30186848 ~ 30212108 (+) False fbxo21

Expression Profile