RNA id: XM_039804411.1


Basic Information

Item Value
RNA id XM_039804411.1
length 1020
RNA type mRNA
GC content 0.41
exon number 3
gene id c6h22orf39
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 26494284 ~ 26496987 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTAAAACTGTGTGTTAgcgcttttattgtgaaatgaaATTAACCGGAAGTATTGCTAGCGTAGCTAGCAATGGACCGGTCTGGAGAAGCAGCGTGGAGGCCGCCCCGGTCCTGTGATGACTATTGGAGTGAATTCAGACATTGCAAAAGCTTGAGGAATTGTTTTCACCACTATTACACTTATGGTACGTCCCCATCTTGCAAGCAGTGGAAAGAGGACTACCATAACTGCAAAGAGTGGGAGAAACACAGAGGCGCCGAGGCCAAGGACGCCTTGCAGAAGAGTGAAAGGAACAGAGTGGCAGAGCAGAGAAACTTCACCCCAGTATGGGAACTGAGGCGAGACCCTCCCAGAGACTGGCACATGCCCTTGAACCAGGAAAAGCCTCAGGACTCCTGAACTGTCACTATTAATCTGCCATCTGTTCCATGGTGGCCAAAGTAAAATGAAGATTTGAGAATTTAACAAAATCGTTGAGAGCCACTTGCTGGAGAGACAGGGCATCACTCATTGCCATCTCAAATTGTATTTAGTGAGCTTCTGTTTGAAAACAGATGTTAGCGGCAGCCTCTAGTGGCCAATGATGAGTATGACAGCATCTATTCAACCAGAGAATTACAAAGGCAGTGTTGTTTTTCCCGTCATAAATTATTGGTTCTCCAAAGCTTGTGTAAACTGAAGCACAAAGGCTGACTGCACATACAGACTCACTGTAAATGAGTTTTAAGATTaaatgcctttttttgtttagtCTAAGAAAAGGAATATTAGGTTAAAATATGTGCAATGGAAACATTTCATGTATTCCATCTAAGTAATGAAGGACCTGTCATGTGTTGTTTTGATAAGGGTTAAATTAAAAATTGCTGTTTCACAAGAATGTACTAACACCTTTGATGGCATCAAGCAGGAGAGTTGGCCCTAGGACTGTAAAAACCTTATTCTCTTTAACCTGTGCTGTTGATACTCCTCTGTGatgaatatattaaatatattattgatgcaataatgacaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86725 lncRNA upstream 110441 26371634 ~ 26383843 (+) False nsd3
TU86705 lncRNA upstream 172328 26303850 ~ 26321956 (+) True G64764
TU86587 lncRNA upstream 565126 25928924 ~ 25929158 (+) True G64677
TU86549 lncRNA upstream 565692 25926087 ~ 25928592 (+) False LOC120560359
TU86572 lncRNA upstream 571896 25922163 ~ 25922388 (+) True G64663
TU86807 lncRNA downstream 16157 26512465 ~ 26514759 (+) True G64834
TU86810 lncRNA downstream 35444 26531752 ~ 26533420 (+) True G64836
TU86814 lncRNA downstream 38704 26535012 ~ 26535307 (+) False G64838
TU86813 lncRNA downstream 38800 26535108 ~ 26537695 (+) True G64838
TU86815 lncRNA downstream 41960 26538268 ~ 26538541 (+) True G64839
XM_039804409.1 mRNA upstream 720 26489321 ~ 26493564 (+) True ufd1l
XM_039804408.1 mRNA upstream 5883 26476188 ~ 26488401 (+) True dhx37
XM_039804407.1 mRNA upstream 18966 26472774 ~ 26475318 (+) True gp1bb
XM_039804406.1 mRNA upstream 23582 26459626 ~ 26470702 (+) True sept5a
XM_039804403.1 mRNA upstream 46771 26415890 ~ 26447513 (+) True zgc:63587
XM_039804369.1 mRNA downstream 3265 26499573 ~ 26505004 (+) True acaa2
XM_039804313.1 mRNA downstream 10337 26506645 ~ 26511245 (+) True rpl6
XM_039804321.1 mRNA downstream 46718 26543026 ~ 26553731 (+) True vdac3
XM_039804322.1 mRNA downstream 46718 26543026 ~ 26553731 (+) False vdac3
XM_039804323.1 mRNA downstream 46718 26543026 ~ 26553731 (+) False vdac3
TU86770 other upstream 79687 26412869 ~ 26414597 (+) True G64814
TU86550 other upstream 578755 25914382 ~ 25915529 (+) False LOC120560031
TU86491 other upstream 797714 25684972 ~ 25696570 (+) False LOC120561182
XR_005639471.1 other upstream 1659653 24823718 ~ 24834631 (+) False cdc14b
XR_005639500.1 other downstream 117929 26614237 ~ 26642481 (+) False cltcl1
TU86927 other downstream 148712 26645020 ~ 26657969 (+) False si:dkey-178e17.1
TU87117 other downstream 708926 27205234 ~ 27301770 (+) True G65084
TU87830 other downstream 2853816 29350124 ~ 29351753 (+) False ubac1
XR_005639517.1 other downstream 3690540 30186848 ~ 30212108 (+) False fbxo21

Expression Profile