RNA id: TU86810


Basic Information

Item Value
RNA id TU86810
length 1353
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id G64836
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 26531752 ~ 26533420 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TATATACTCAAAGTTAACAGCTGGATATTcaaaaacatttccattttttttattgtttttatattttgagaaAGGTTTGCAATCATCCACATACAAAACTGAATCCAAATCGTAATCTTCATATTGTGTGTTAGAGATTAAAATCTGTCTCCCGGGTATACTGTAGCAATATTTCAGTTACCAATTTCTTTAATCTACTGCTTTCAAAATGCCCCCCTAAAAAGCACTGAAGATACAATTATGTCCTGACTTAACACACGTTATTATTTTCACACAACCACATACCGAAGATTATTCAAGTCTACCAGTGTAACAGTCATATATTCACACATCAATTAACAACTGAGAAAATGTTTCTTATTTATCGCAACAAATCAATGATCTTTTTGTGCCAAATTAGCCTCATTGCATTTCTTCTTTCCAAATAATTAGTTTGCCCGACTTAGAAGAGAAATACTATAAGTCTAAAAACGCACACTCTTAAAAGTCCAATGGtgaatgagattttttttaaactactaaCATAAAGCAATACAGCTGTGCTGTCTGAATGTGTAACAATTTGAGATTAAAACACTTTGCACAACTTGGCCAAAGAGTTAAAGGGCACTACTGTCAAGGCAGAATGCCTTGATGAAAGTGGTCCTCATTATTCATGATTGACAAACAACTGTAACAGAAGCTAGTTCTTTGAGTTCCTCTTAGATTATGGTAGAATccttaaaatgaaaaattgtgGTCAAAAAATAAATTAGTCAAGTTTTTAAACATGATTTAAAAACTTGCTTAAATATGGAGCCCACAGGCCTTCACAAAGATACACCATGGAGAATTAAACCGAagatacaaacaaaataattttgTTGTGCAGAGCATGACATTTTAGGTTAAATGTCATTAAAGGGGATGGTTTCAATTTAAGACAAGAACAACAATTAAAATGACTTTCACAGTTCTTTTCAATAACATTGTTGAATAGAATACTATCATGCAAATTGGTACACATGCTTCTCGTTTGCAGGAAAGCTGTAGCTTCAAATACAGATGTAACTGTAAGCTGTCCTTTACTTCACTCGCTGCGGTCCTTTGGCTCTCTGTATTTGTAGTGAATGTATTCAAAGATGTCTCTCTCACTATCCACCAACAGAGGCTCGCCTGCCACACCAGTGACCCCAACTGGCCGAATGGTGTACTCATTGAGTGTGAAGCCCTTCTCCAGAGCATGAGTTCTCATGTTTTTATTGAAGATATCacttccagtgaaatacagaacTCCACAGTAGTACTGGTCCTTGGGAATTAACCTAATATCAATACGCCTGTGAAGGTATTCTTCCTCATCTTCATCACTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86807 lncRNA upstream 16993 26512465 ~ 26514759 (+) True G64834
TU86797 lncRNA upstream 34765 26494335 ~ 26496987 (+) True c6h22orf39
TU86725 lncRNA upstream 147909 26371634 ~ 26383843 (+) False nsd3
TU86705 lncRNA upstream 209796 26303850 ~ 26321956 (+) True G64764
TU86587 lncRNA upstream 602594 25928924 ~ 25929158 (+) True G64677
TU86814 lncRNA downstream 1592 26535012 ~ 26535307 (+) False G64838
TU86813 lncRNA downstream 1688 26535108 ~ 26537695 (+) True G64838
TU86815 lncRNA downstream 4848 26538268 ~ 26538541 (+) True G64839
TU86816 lncRNA downstream 5238 26538658 ~ 26540223 (+) True G64840
TU86818 lncRNA downstream 6995 26540415 ~ 26540636 (+) True G64841
XM_039804313.1 mRNA upstream 20507 26506645 ~ 26511245 (+) True rpl6
XM_039804369.1 mRNA upstream 26748 26499573 ~ 26505004 (+) True acaa2
XM_039804411.1 mRNA upstream 35444 26494284 ~ 26496308 (+) False c6h22orf39
XM_039804409.1 mRNA upstream 38188 26489321 ~ 26493564 (+) True ufd1l
XM_039804408.1 mRNA upstream 43351 26476188 ~ 26488401 (+) True dhx37
XM_039804321.1 mRNA downstream 9606 26543026 ~ 26553731 (+) True vdac3
XM_039804322.1 mRNA downstream 9606 26543026 ~ 26553731 (+) False vdac3
XM_039804323.1 mRNA downstream 9606 26543026 ~ 26553731 (+) False vdac3
XM_039804324.1 mRNA downstream 9606 26543026 ~ 26553731 (+) False vdac3
XM_039804082.1 mRNA downstream 52360 26585780 ~ 26597313 (+) False plat
TU86790 other upstream 35366 26494335 ~ 26496386 (+) False c6h22orf39
TU86791 other upstream 35424 26494335 ~ 26496328 (+) False c6h22orf39
TU86793 other upstream 35491 26494335 ~ 26496261 (+) False c6h22orf39
TU86770 other upstream 117155 26412869 ~ 26414597 (+) True G64814
TU86550 other upstream 616223 25914382 ~ 25915529 (+) False LOC120560031
XR_005639500.1 other downstream 80817 26614237 ~ 26642481 (+) False cltcl1
TU86927 other downstream 111600 26645020 ~ 26657969 (+) False si:dkey-178e17.1
TU87117 other downstream 671814 27205234 ~ 27301770 (+) True G65084
TU87830 other downstream 2816704 29350124 ~ 29351753 (+) False ubac1
XR_005639517.1 other downstream 3653428 30186848 ~ 30212108 (+) False fbxo21

Expression Profile