RNA id: TU86978



Basic Information


Item Value
RNA id TU86978
length 336
lncRNA type inter_gene
GC content 0.46
exon number 4
gene id G64967
representative True

Chromosome Information


Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 26893701 ~ 26896143 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TGGACTGGTTTCCCAGGTGCTCTGACTTTGCCACAAGATCATCcagtttctctcctctctccaacAGGCTTTCCATGGTGTTGTGCAAAATGATCTTTGTCTCATCCAGCTCTGCCTGCACTTTGGTCATTGCATCTGCTTCCCTGGGgttCTGGTATTTAGAAAGGTGAATATCCAGGGCTTTGTAGTTTATGGTTTCAGGATTACCAGAGGGCCAGTCTATACTGTCCACTTGCCTAGAGAACTCCTCTAATACCTTGTCTAGCAATGTGAAACAGACTCTCTGTGGGTATTCAGTGTCTGCAATGACTACAGCGCTCAGGTTGTCATTTCTTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU86951 lncRNA upstream 64516 26761391 ~ 26829185 (+) True G64949
TU86940 lncRNA upstream 209446 26682518 ~ 26684255 (+) True G64944
TU86926 lncRNA upstream 230175 26662767 ~ 26663526 (+) True G64930
TU86879 lncRNA upstream 312888 26572244 ~ 26580813 (+) True G64893
TU86818 lncRNA upstream 353065 26540415 ~ 26540636 (+) True G64841
XR_005639508.1 lncRNA downstream 1759 26897902 ~ 26899558 (+) True LOC120560738
TU87101 lncRNA downstream 140910 27037053 ~ 27039599 (+) True ndufs4
TU87102 lncRNA downstream 142667 27038810 ~ 27039599 (+) False ndufs4
TU87114 lncRNA downstream 303806 27199949 ~ 27200190 (+) True G65083
TU87119 lncRNA downstream 403789 27299932 ~ 27350555 (+) False G65084
XM_039803533.1 mRNA upstream 5875 26877033 ~ 26887826 (+) True osmr
XM_039803526.1 mRNA upstream 16750 26837272 ~ 26876951 (+) True LOC120560731
XM_039803527.1 mRNA upstream 16750 26837272 ~ 26876951 (+) False LOC120560731
XM_039803528.1 mRNA upstream 16750 26837272 ~ 26876951 (+) False LOC120560731
XM_039803529.1 mRNA upstream 16750 26837272 ~ 26876951 (+) False LOC120560731
XM_039803535.1 mRNA downstream 5656 26901799 ~ 26907519 (+) True gck
XM_039803536.1 mRNA downstream 5656 26901799 ~ 26907514 (+) False gck
XM_039803323.1 mRNA downstream 12060 26908203 ~ 26910428 (+) True myl7
XM_039803319.1 mRNA downstream 28385 26924528 ~ 26945467 (+) True adamts12
XM_039802161.1 mRNA downstream 56077 26952220 ~ 26961992 (+) True fgf10b
TU86927 other upstream 235732 26645020 ~ 26657969 (+) False si:dkey-178e17.1
XR_005639500.1 other upstream 251220 26614237 ~ 26642481 (+) False cltcl1
TU86790 other upstream 397315 26494335 ~ 26496386 (+) False c6h22orf39
TU87117 other downstream 309091 27205234 ~ 27301770 (+) True G65084
TU87830 other downstream 2453981 29350124 ~ 29351753 (+) False ubac1
XR_005639517.1 other downstream 3290705 30186848 ~ 30212108 (+) False fbxo21
TU88038 other downstream 3350744 30246887 ~ 30250240 (+) False LOC120560820
TU88040 other downstream 3351796 30247939 ~ 30250268 (+) False LOC120560820

Expression Profile