RNA id: TU87122


Basic Information

Item Value
RNA id TU87122
length 280
lncRNA type sense_over
GC content 0.39
exon number 2
gene id G65084
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 27205234 ~ 27370959 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACAGTTAAATTGACAAGCAACGGCTTCTACAaattaatgatttatttttccAAGGTTATTTACATTATGTACACCAACACATCCCCAAAATACACTACATACAGTAACACTATGCACAAAATCTCAGAAAGATTGTGTGCAATGAAAGCAGGTATCTTCATCAGTTATACAGTGTATCAGTAATCTCTCAGCACAAGGCACACTTCTTGGacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87114 lncRNA upstream 99742 27199949 ~ 27200190 (+) True G65083
TU87101 lncRNA upstream 260333 27037053 ~ 27039599 (+) True ndufs4
TU87102 lncRNA upstream 260333 27038810 ~ 27039599 (+) False ndufs4
XR_005639508.1 lncRNA upstream 400374 26897902 ~ 26899558 (+) True LOC120560738
TU86978 lncRNA upstream 403789 26893701 ~ 26896143 (+) True G64967
TU87147 lncRNA downstream 8039 27378998 ~ 27379215 (+) True G65106
TU87150 lncRNA downstream 18498 27389457 ~ 27389862 (+) True G65108
TU87249 lncRNA downstream 105789 27476748 ~ 27476966 (+) True G65171
TU87374 lncRNA downstream 532116 27903075 ~ 27904933 (+) True G65272
TU87444 lncRNA downstream 631580 28002539 ~ 28005121 (+) True G65314
XM_039804607.1 mRNA upstream 106413 27179360 ~ 27193519 (+) True snx18a
XM_039804611.1 mRNA upstream 260358 27012210 ~ 27039574 (+) False ndufs4
XM_039804302.1 mRNA upstream 288611 27005139 ~ 27011321 (+) True fsta
XM_039804303.1 mRNA upstream 288611 27005140 ~ 27011321 (+) False fsta
XM_039804261.1 mRNA upstream 297288 26981345 ~ 27002644 (+) True itga2.2
XM_039803935.1 mRNA downstream 23458 27394417 ~ 27417204 (+) True mthfd2l
XM_039803936.1 mRNA downstream 23738 27394697 ~ 27417204 (+) False mthfd2l
XM_039802202.1 mRNA downstream 47750 27418709 ~ 27420717 (+) True LOC120560091
XM_039802078.1 mRNA downstream 51578 27422537 ~ 27428690 (+) True LOC120559995
XM_039802087.1 mRNA downstream 63036 27433995 ~ 27442196 (+) True areg
TU86927 other upstream 641963 26645020 ~ 26657969 (+) False si:dkey-178e17.1
XR_005639500.1 other upstream 657451 26614237 ~ 26642481 (+) False cltcl1
TU86790 other upstream 803546 26494335 ~ 26496386 (+) False c6h22orf39
TU87830 other downstream 1979165 29350124 ~ 29351753 (+) False ubac1
XR_005639517.1 other downstream 2815889 30186848 ~ 30212108 (+) False fbxo21
TU88038 other downstream 2875928 30246887 ~ 30250240 (+) False LOC120560820
TU88040 other downstream 2876980 30247939 ~ 30250268 (+) False LOC120560820
TU88039 other downstream 2877024 30247983 ~ 30251519 (+) True LOC120560820

Expression Profile