RNA id: TCONS_00074457


Basic Information

Item Value
RNA id TCONS_00074457
length 3195
RNA type mRNA
GC content 0.43
exon number 13
gene id XLOC_037927
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 31589425 ~ 31747106 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCGCGCGGCTGCTGTGACTGAAGCTCGAGCTCAATGCAACGAGTCATGGACTACACGGCGCATTAAAGGACATACTTCAAGAACCGGACAGGCCTCAACTCAACAGGCCCCCATCAGCTGTCTTTCGTACTGAATTCAGTTCCTGTCTATGCCGGGGATGAATGCACCAATGAGGAGCCTGACCGGTATGCCTGATCGCATGTTATGTGCAGTGCTGGAGCAATTTCAGCTTTACTTTTCCCGTTGATCCACTCTCTCTATAGCACAGCGAGCCCAAGCATGCTGAAGAGGAAGCAGAGCTCGCGGGTCGAGGCCCAGCCTATGACTGACTTTGGGCCAGACGAAACACTGACAGACAGTGCTGACATTCTTTGGATCAATAAACCATGGGTTCACTCTCTCCTGCGGGCCTGTGCCATAATCAGTGTTATTTCGGTTTGTATGAATACACCTAAGACCTTTGAGCACTACCCTCCCCTACAGTATGTCACCTTCGCCCTGGACACACTGCTGATGTTCCTGTACACCGCAGAGATGATCGCCAAAATGCATATCAGGGGCATCATCAAGGGAGAAAACTCCTATGTTAAAGACCGCTGGTGCATGTTTGATGGCTTCATGGTGGTCTTCCTCTGGGTCTCTCTTGTGCTTCAGGTGTTTGAAATAGCGGAGCTCGTGGACCAAATGTCACCCTGGGGAATGTTACGCATACCGAGGGCCCTTATTATGATCCGAGTCTTCCGAATCTATTTCCGATTTGAATTGCCACGTAGCCGGATAACCAACATTCTCAAgcgCTCAGGGGAGCAGATCTGGAGTGTGACCATATTTTTGCTATTCTTCCTTCTTCTTTATGGAATCCTGGGGGTTCAGATGTTTGGCACATTCAATCATCATTGCGTCACCAATGAAACAGAAAAAGAGAAAGTGACATGGAACAGCCTAGCAATCCCGGATACACACTGCTCTCCGAACGGGGAGGGATATCAGTGTCCAGTGGGCTTTAAGTGTGTGGATCTGGAAGATTATGGACTCAGTAGACAAGAACTTGGATACAGTGGATTCAATGAGCTTGGCACCAGTATATTCACTGTATATGAGGCTGCGTCTCAGGAGGGCTGGGTCTTCATCATGTATCGAGCCATCGACAGCTTCCCACGCTGGCGCTCATATTTCTACTTCCTCACGCTCATCTTCTTCCTCGCCTGGCTGGTCAAGAATGTGTTCATTGCTGTGATTATCGAAACGTTTGCTGAGATCAGAGTGCAGTTCCAGCAGATGTGGGGATCCCGGAGCAGCACCACGTCAACAGCTACTACACAGATGTTTCACGAGGACGCGTCTGGAGGATGGCAGCTCGTGGCGGTGGACGTGAATAAACCACATGGCCGGGCGCCTGCTTGCCTCCAGAAAGCCAGAACCAATTCTGGGTGAAGTCAAGAGCCCTGAGAAAATGGAGTCACCTGTTAGTCCCCCTTTAGCCGAAGCACCCGAGGGAAAACCAACATCGagaaactgaaaatgtcaaactGCTTTGTCATGTCTGATATTAGTCATAGAGGCTGCTCTGCAAGTTCTGAGCTGTGATCCCGGACTAGAGCAGCAGACAGTCCAGACTGCCACTGTCCTTCTCTCATCCTTCTCCCTCGAGATATTGTGCGAGATACTTGGTACAGTACGTTTTCTGGAGCTCTAAAAGTTCTTTGCAACTACAGACTTTTCTTTACAGACTAGACAGTAAAAAAATCACTTCATTACTATTTCgaaatttgtaatttaaatatgtaaaaacacaATTGTggaattctttaaattattttgatcTTATATACACTCTTGAagttaaaatgattagccctcatgTGAATTTTTGAtctcttaaatatttcccaaatgatgtgtagCAGAGCAAGAaatctttcacagtatttcctataataatttttcttctatttgttttattttggcttgaataaaagcagttttatttactattagccccttaagcaatttttttttcagttgtccacagaacaaaccacggTTATgcgatgacttgcctaattaccctaacttgcctagttaaaccATAGATctttacattagatgtcacctatCCTGTTGTTGTCcattggaaggaatgcatcaatagagctgCCTATTTAGTACAGGATAGCgcttctttgaaatgaatgtgggtcCAAGGTGTAGCTTAGGACTGGCCATCCGAAGCcacagatatttaaacatttatacgTGTATCTACAATTGGAGGTTTTCCTTGTGATGAGTATGGTATaatctctctaggttttttttctttactcccatcaagtgaagtttttttccctctccgctgtcgccactggctcgcatggttcaggattggttgagctacgcatcgatgaatttgctcttcagtgtttgaactctcagtaatgattaaatcacactgaactgagctaaactgaactgtactgaacttaaacactaaaaactgaactacactgtttcagttactatgaccatttatgtgaagctgctttgacacaatctacattgtaaaagcgctatacaaataaagctgaattgaattgaattgaaagtatgcacattttcttttattagaaaaattattattttacagtacttttctGAATCGATGCATAAGTGACTGCACAGATAATGCCGACAAAGAACAAGTTTGTGTTCATGTAAATGTCCCTCTCTCcattaaatttgatctaattcatgtcctgaaacacaccccttCTCCCGCTTTCACTTcggagggagtgattcgtttgtgaatgaatctccgttatgaatgaTTCATGCGAACCATTGATATCCTTGCGTCTCAGTGTGCATATTCACCTTTCTGAtctataacatttattatattcaataatttatgttGGACAGTATGCACAATTAGGCGTGGGCACTGTTATGTTATCACTGTTATCAGGCACCCTTATAAGTTACTTCAACGTTCGTgaacttagccgacaataatacaagtttatgGCACGTGCAgtgtcttgttgtcatattttattcaCAGTGTTTGCtgaatttattcaacaaaactagcttaAGCAAAGTATTTAGTGCAAGGTAACGGTActtggtcagtgcagtaagagactgaATTACCATCAATGACAATACTTGTTGTGCACAGAAGTTca

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005216 ion channel activity molecular_function
GO:0005261 cation channel activity molecular_function

KEGG:

id description
ko04040 Ion channels

ZFIN:

id description
ZDB-GENE-050410-12 Predicted to enable cation channel activity. Predicted to act upstream of or within ion transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in central nervous system. Orthologous to human NALCN (sodium leak channel, non-selective).

Ensembl:

ensembl_id ENSDART00000145204

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00074443 lncRNA downstream 424205 31264412 ~ 31271926 (-) False XLOC_037924
TCONS_00075386 lncRNA downstream 424523 31264412 ~ 31271608 (-) False XLOC_037924
TCONS_00074444 lncRNA downstream 424681 31266259 ~ 31271450 (-) True XLOC_037924
TCONS_00075385 lncRNA downstream 805690 30879720 ~ 30890441 (-) True XLOC_037918
TCONS_00075384 lncRNA downstream 805735 30879720 ~ 30890396 (-) False XLOC_037918
TCONS_00074459 lncRNA upstream 7975 31755081 ~ 31780466 (-) True XLOC_037928
TCONS_00074460 lncRNA upstream 11527 31758633 ~ 31763256 (-) False XLOC_037929
TCONS_00075387 lncRNA upstream 50739 31797845 ~ 31810047 (-) True XLOC_037930
TCONS_00074988 lncRNA upstream 310600 32057706 ~ 32058334 (-) True XLOC_037932
TCONS_00074464 lncRNA upstream 349225 32096331 ~ 32105779 (-) False XLOC_037933
TCONS_00074456 mRNA downstream 100115 31592230 ~ 31596016 (-) False XLOC_037927
TCONS_00074448 mRNA downstream 171005 31494941 ~ 31525126 (-) False XLOC_037926
TCONS_00074447 mRNA downstream 171005 31494941 ~ 31525126 (-) False XLOC_037926
TCONS_00074453 mRNA downstream 171056 31524382 ~ 31525075 (-) True XLOC_037926
TCONS_00074452 mRNA downstream 171075 31522096 ~ 31525056 (-) False XLOC_037926
TCONS_00074462 mRNA upstream 13048 31760154 ~ 31763246 (-) True XLOC_037929
TCONS_00074463 mRNA upstream 90938 31838044 ~ 31915423 (-) True XLOC_037931
TCONS_00074466 mRNA upstream 362805 32109911 ~ 32142311 (-) False XLOC_037934
TCONS_00074467 mRNA upstream 362805 32109911 ~ 32158288 (-) True XLOC_037934
TCONS_00074468 mRNA upstream 414517 32161623 ~ 32177117 (-) False XLOC_037935
TCONS_00074451 other downstream 171102 31518754 ~ 31525029 (-) False XLOC_037926
TCONS_00074446 other downstream 381807 31274108 ~ 31314324 (-) True XLOC_037925
TCONS_00074442 other downstream 508272 31187738 ~ 31187859 (-) True XLOC_037923
TCONS_00074437 other downstream 988177 30707839 ~ 30707954 (-) True XLOC_037916
TCONS_00074436 other downstream 1016113 30677470 ~ 30680018 (-) True XLOC_037915
TCONS_00074461 other upstream 12400 31759506 ~ 31761529 (-) False XLOC_037929
TCONS_00074471 other upstream 453544 32200650 ~ 32205543 (-) False XLOC_037937
TCONS_00074475 other upstream 512708 32259814 ~ 32264658 (-) False XLOC_037940
TCONS_00074476 other upstream 527202 32274308 ~ 32279187 (-) True XLOC_037942
TCONS_00074481 other upstream 608129 32355235 ~ 32358665 (-) True XLOC_037945

Expression Profile

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