RNA id: TU87533


Basic Information

Item Value
RNA id TU87533
length 206
lncRNA type inter_gene
GC content 0.56
exon number 1
gene id G65396
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 28766020 ~ 28766225 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCCTTGTGGCGTGGCTAGTGAGCAGGGTTAGGGTAGGTCTTGGGGGAATTCTGCTGGGTAGGCGAGGTGCAGCAGGGAGCTCACTGGTGGAGTTTAGcaaggagaggacaggagaccTTGAATTCCAGCGGAGATTCATCCAGCTCCAGTCGTCCTTGGCTTGGGTTATGGGCTTTCTGGGTGCAGGAAAACAGAGCAGTGGTTA

Function

GO:

id name namespace
GO:0009186 deoxyribonucleoside diphosphate metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87531 lncRNA upstream 9827 28755865 ~ 28756193 (+) True G65394
TU87522 lncRNA upstream 144721 28621085 ~ 28621299 (+) True G65385
TU87515 lncRNA upstream 302916 28462625 ~ 28463104 (+) True G65378
TU87497 lncRNA upstream 394179 28371456 ~ 28371841 (+) True G65362
TU87444 lncRNA upstream 760899 28002539 ~ 28005121 (+) True G65314
TU87555 lncRNA downstream 49029 28815254 ~ 28815476 (+) True G65417
TU87556 lncRNA downstream 49960 28816185 ~ 28816400 (+) True G65418
TU87569 lncRNA downstream 79401 28845626 ~ 28847247 (+) True mboat4
TU87618 lncRNA downstream 219388 28985613 ~ 29002180 (+) True G65473
XR_005639509.1 lncRNA downstream 306716 29072941 ~ 29131216 (+) True LOC120560778
XM_039803645.1 mRNA upstream 343977 28117914 ~ 28422043 (+) True si:dkey-215k6.1
XM_039803263.1 mRNA upstream 687117 28034779 ~ 28078903 (+) True aacs
XM_039802373.1 mRNA upstream 764998 27986123 ~ 28001022 (+) False si:dkey-164f24.2
XM_039803241.1 mRNA downstream 8674 28774899 ~ 28800682 (+) True jak2b
XM_039803242.1 mRNA downstream 41128 28807353 ~ 28812996 (+) True zgc:114041
XM_039804022.1 mRNA downstream 80870 28847095 ~ 28849471 (+) False mboat4
XM_039802531.1 mRNA downstream 94286 28860511 ~ 28873349 (+) True LOC120560259
XM_039802532.1 mRNA downstream 107417 28873642 ~ 28879999 (+) True mfsd10
TU87117 other upstream 1464250 27205234 ~ 27301770 (+) True G65084
TU86927 other upstream 2108051 26645020 ~ 26657969 (+) False si:dkey-178e17.1
XR_005639500.1 other upstream 2123539 26614237 ~ 26642481 (+) False cltcl1
TU86791 other upstream 2269692 26494335 ~ 26496328 (+) False c6h22orf39
TU87830 other downstream 583899 29350124 ~ 29351753 (+) False ubac1
XR_005639517.1 other downstream 1420623 30186848 ~ 30212108 (+) False fbxo21
TU88038 other downstream 1480662 30246887 ~ 30250240 (+) False LOC120560820
TU88040 other downstream 1481714 30247939 ~ 30250268 (+) False LOC120560820
TU88039 other downstream 1481758 30247983 ~ 30251519 (+) True LOC120560820

Expression Profile