RNA id: TU87555



Basic Information


Item Value
RNA id TU87555
length 223
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G65417
representative True

Chromosome Information


Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 28815254 ~ 28815476 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


AATccaatacaaatagaaaacacGTCATTGATTGAACACAACCACTCAAAATTGATTTCACCTGTTTAAAATGTGACAGATTTTGACTGGTTGCAGGTTCATATCAACAAAGAACAAGAATTACAGTATCACAGAGacaaaggacaagtttgtgagaTGCAGGGTATAGTACTGTAAAAATAGGGGtacaaggaggaggaagaacaaacaaaaaattgcAAAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU87533 lncRNA upstream 49029 28766020 ~ 28766225 (+) True G65396
TU87531 lncRNA upstream 59061 28755865 ~ 28756193 (+) True G65394
TU87522 lncRNA upstream 193955 28621085 ~ 28621299 (+) True G65385
TU87515 lncRNA upstream 352150 28462625 ~ 28463104 (+) True G65378
TU87497 lncRNA upstream 443413 28371456 ~ 28371841 (+) True G65362
TU87556 lncRNA downstream 709 28816185 ~ 28816400 (+) True G65418
TU87569 lncRNA downstream 30150 28845626 ~ 28847247 (+) True mboat4
TU87618 lncRNA downstream 170137 28985613 ~ 29002180 (+) True G65473
XR_005639509.1 lncRNA downstream 257465 29072941 ~ 29131216 (+) True LOC120560778
TU87732 lncRNA downstream 262950 29078426 ~ 29098313 (+) True G65565
XM_039803242.1 mRNA upstream 2258 28807353 ~ 28812996 (+) True zgc:114041
XM_039803241.1 mRNA upstream 14572 28774899 ~ 28800682 (+) True jak2b
XM_039803645.1 mRNA upstream 393211 28117914 ~ 28422043 (+) True si:dkey-215k6.1
XM_039803263.1 mRNA upstream 736351 28034779 ~ 28078903 (+) True aacs
XM_039802373.1 mRNA upstream 814232 27986123 ~ 28001022 (+) False si:dkey-164f24.2
XM_039804022.1 mRNA downstream 31619 28847095 ~ 28849471 (+) False mboat4
XM_039802531.1 mRNA downstream 45035 28860511 ~ 28873349 (+) True LOC120560259
XM_039802532.1 mRNA downstream 58166 28873642 ~ 28879999 (+) True mfsd10
XM_039802533.1 mRNA downstream 58298 28873774 ~ 28879999 (+) False mfsd10
XM_039802534.1 mRNA downstream 65555 28881031 ~ 28890870 (+) True LOC120560261
TU87117 other upstream 1513484 27205234 ~ 27301770 (+) True G65084
TU86927 other upstream 2157285 26645020 ~ 26657969 (+) False si:dkey-178e17.1
XR_005639500.1 other upstream 2172773 26614237 ~ 26642481 (+) False cltcl1
TU86791 other upstream 2318926 26494335 ~ 26496328 (+) False c6h22orf39
TU87830 other downstream 534648 29350124 ~ 29351753 (+) False ubac1
XR_005639517.1 other downstream 1371372 30186848 ~ 30212108 (+) False fbxo21
TU88038 other downstream 1431411 30246887 ~ 30250240 (+) False LOC120560820
TU88040 other downstream 1432463 30247939 ~ 30250268 (+) False LOC120560820
TU88039 other downstream 1432507 30247983 ~ 30251519 (+) True LOC120560820

Expression Profile