RNA id: XM_039804273.1


Basic Information

Item Value
RNA id XM_039804273.1
length 3803
RNA type mRNA
GC content 0.42
exon number 10
gene id ubac1
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 29344580 ~ 29351756 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTCAAAGTTCAAGCATACAGTAAAAATAGGGTACTTGCTGGCTGGTTGCTTGTGTGTTCGCTGGGAATAATAAACAACTTGGTGGTCACTGAACACTTTAATCGGTTGCCACCGCACCGAAAACCGGCAGAGGAAACCGAAGATGGCCCTCAGCTAATCGGCTCCTTCTCTTGCTCTGTTGTCGGTGGATTTACGGAACGACAGCTAGCtgggtgctaacgttagcacgcTAGCTTGCCAGGAGCACATATAGCAACtgctgctagctaacgtcacTGGACTGGTACTCTTTACTCTCAAGACTGCAGCTATGTTTGTCCAAGAGGAGAAGATATTCGCCGGTAAAGTGTTGAAAATACACATCTGCACCATGGACGGCACGGAGTGGTTGGAGGAAGTCACGGAAGACACCACTGTAGAGAAGCTGAAGGAGAAGTGCTTGAAACATTATGTTCATGGAAGTCTAGAAGACCCCAAAACACTCACCCACCATAAACTCATACACGCTGCTACAGAGAGAGTCCTCACAGACACTAAAACTGTCGCTGATGAAAATCTGAAAGATAAAGAGGTTTTGCTGCTCATAAAGAAAAGACCGCCACCAACCGCTCCCAAGATGGCAGACGTTAGTTCTGATGAAAAGAAGAAACAAGATAACAAGGCTCCAGACAAAGATGCAATTCTGAAAGCCACCGGCAACCTGTCCACACGCCACACTGACCGCACTGTTACCCAGCATAACATCAGAGATTTTCAGACGGAGCTACGAAAAATCCTGGTTTCTCTCATTGAAGTCGCCCAGAAGCTTCTTGCCTTGAACCCTGATGCTGTCGAACTTTTCAAAAAGGCCAATGCAATGTTGGACGAAGATGAAGATGACCGGGTGGATGAAACAGCCCTTCAGCAGCTCACTGAGATGGGTTTCCCTGAGAGCAGAGCGATCAAAGCTCTTAGATTGAACCACATGTCAGTCACCCAGGCAATGGAGTGGCTGATCGAGCATGTAGATGACCCCTCTGTAGACACACCTATACCTGGCCAGGACTCTTCTGGGGCAGCAGGAGCCACGGCTGCTGCCACACCAGGCTCCTCAGCCGCAGCCTCAGCCGCAGCTTCAGCCGCAGCTTCAGCCGCAGCCTCCGGTCCTAACCTTCTCCGCAGCCTCTCCAGCCAGTTGAGCACAGAAGAGAGCAGCAGGCAGGACGAGCTCACAGAGATCTTCAAGAGGATCCGCAGGAAACGGGAGTTCAGACCAGACTCAAGAGCTGTTATTGCATTGATGGAGATGGGGTTTGATGAGAAGGAGGTGGTTGATGCTCTGAGGGTGAATAACAACCAACAGGATGCTGCGTGTGAGTGGCTACTGGGAGACAGGAAACCTTCTCCAGAAGATCTAGACAAAGGCATCGACACCAACAGCCCGCTGTTCCAAGCCATTCTGGAGAATCCAGTGGTCCAGTTGGGTCTAACCAATCCCAAGACCCTGCTAGCATTTGAAGACATGCTTGAGAATCCTCTGAACAGCACCCAGTGGATGAACGACCCTGAGACTGGCCCCGTCATGCTCCAAATATCCAGAATCTTCCAGACCCTCAATCGCACATAGAGCCTCCTGGTGACCCCCTGTGTGACTGCGGCagcttgtgtgtatgtttgaccatattggggtgtgtgtgtgagtatggaTGCATGTGTATCTGAGTGTGGCAGAGACgcaagtattgtttttttgcctTGTAAAGACAAAGCTGGAGGAGTGAAAGTATGAATTAAGATGTTACACATATACCTATTTATAACAGTACAGTAAAAACACTTATACAAAACCAATGTTAACAtaaacattacagtaataaaaacGAGATATTTAGtatgttgtttttacattttaatgagaACAATTTATAGTCATGACAGAcatgatttattttatataatttctCCATGTGCAAAAATGACATCAGACATTAATTCAATGTTTACACTTCAAAGAAAACTGTTTTGGTATGTTTTGTTTTGGTATATTTAAATATCAATTACAGTTTTGTCCGTCtctttaaattgttacattttatcTGTGGTGAATGTGTGGAAGACTTCTGTCAgtatcatgttttgtttttcttctcccttttgtctttgtttttatcaAAGTAACTGCTTGTAATTGAGAGGCTGGTGGTCAAAGTTGAGTGTATGTTTAGCTCGTTAAAAATGGGCTTTCAGACACATTACCTCTATCTCGGTCCATGCCTGTGAGGTCATTTGAAGTCGACCGCCTCTCAGTTTAAAGCGGAGAACATATGTCCTTGAAAATTCTTCAAGAATATTTATTTGACTTTCTTGCCTTTTAGACAGAAGCTGTACACTAAACTGTTTGTGTCTTAGTCATGTTTTTACAAGAAAATTATATATTAGGCCTGTGTGTTTATTGTCAATGTGCTCTTGAATGTCATATTATCATGTTGCGCTCATTTAGCACTTGTTCACCTCTATGGATATCACTCACTGCAGCACCGAGGAAGTTAAAAGAAGGGTTCAGGTTTTGTCTCAAAAAGCTGTAGTGGGATGTTAAATGAAGCTGAGCCTAATCAAAAGGGGTTTgcctttttaacctttttaattTGAATGATGAAGATGCGTGTTCACTTTTTGCTGCGAAGGTGCAAGCATCTTCATACACAAAGAAATAATAGAATTTGAGACACAACCAGTGTTGGTCTTTtggtttactttttttcttttcttttgagagCAGTGAACATTTATGCtgtcaaaccaaaccaaaatgtCACTATATAACCTGCCTTGTCATTAGTTGTACCCATTGAAAACTACCCTGTATTTCTGTGCAATAGCAAAGAGTTCTATTGACCTGTAAAGAAATATATTTGATTTGAGTGTTAGAGATGTGTGAACTGCAATGGGTAGTGTGTTCTACAATATTAGTCTTTGCATTGACATTGTACTTAAAAGATCCAGTACCGAGAGTTAAAAACAACATGGAGGGTGGTATGTTTTGCCAAGctttttagtgtttttattcaatatttaaaatgtggtATTGATGTGACTTTCTGCTCAGGGAGGCTGAGATTGTTTTTCTAAACCTGTTGTTATGGCAAACCTCTGCTCACCCCCCTTCTAGTTTGGCATTTAAAAATGGCTTTAACTAATCTGTCTAGAACTTTATGAATAAGAGCACTACAAGACATGGTTTCGTaaatgcaatatttgaaaatatttaaatgtttttagagAGAAGTGTCTGTTTGAACTatgtattattacattatttatatCGAAGCCAAACTAGTTACTTGTTCTTATTTATAAAATTTTTAGCAAACCTTGAAGCTAATCTacaaatgtgaaaaaattaaatgattcaaatgttgtttttacaaACCATTGTAAATGTGCTTTGGACTGGTAGGTCTCAGTGTGATTTAAAAGTAGTGCAACATGTTTGCCTGAAGAAGGATTTCTACACACGTCTCTGGAACCCTCTCTGCACTGCAGTGGACTTTCATCATAGCCACAGTGACTGTCTCACCTCCTCCATGCATTGCATTAGTATGCATACAAAACTCTCCCCTAATATCTTGAAACAAACATTGGGAGATTCTACTTCTCTAAAGGACTGTTGGAGTCACAGGTTTTTGTTTTCACTCAGCTATCATGCAGGACTGTCCCCGATTAACAACCTATGCAATATACTCTCACAGTCTGTTCACTCAGACAGCCTCATGGCTACTGGCATTCAAATCACCATTGCATTAAAGTTATTTTTGTGGCTGTA

Function

GO: NA

KEGG:

id description
K12174 KPC2, UBAC1; Kip1 ubiquitination-promoting complex protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639509.1 lncRNA upstream 213364 29072941 ~ 29131216 (+) True LOC120560778
TU87739 lncRNA upstream 238971 29103988 ~ 29105609 (+) True G65570
TU87732 lncRNA upstream 246267 29078426 ~ 29098313 (+) True G65565
TU87618 lncRNA upstream 342400 28985613 ~ 29002180 (+) True G65473
TU87569 lncRNA upstream 497333 28845626 ~ 28847247 (+) True mboat4
TU87928 lncRNA downstream 195693 29547449 ~ 29614880 (+) True G65710
TU87931 lncRNA downstream 237251 29589007 ~ 29591364 (+) True G65713
TU87952 lncRNA downstream 419883 29771639 ~ 29771864 (+) True G65734
TU87956 lncRNA downstream 460216 29811972 ~ 29812218 (+) True G65738
TU87965 lncRNA downstream 584137 29935893 ~ 29936995 (+) True G65745
XM_039803258.1 mRNA upstream 1180 29297122 ~ 29343400 (+) True LOC120560594
XM_039803259.1 mRNA upstream 1180 29297122 ~ 29343400 (+) False LOC120560594
XM_039803794.1 mRNA upstream 84253 29258918 ~ 29260327 (+) True LOC120560903
XM_039804370.1 mRNA upstream 95679 29242722 ~ 29248901 (+) True pmpca
XM_039803949.1 mRNA upstream 120900 29220854 ~ 29223680 (+) True LOC120561007
XM_039803044.1 mRNA downstream 2364 29354120 ~ 29382295 (+) True camsap1b
XM_039803046.1 mRNA downstream 2364 29354120 ~ 29382295 (+) False camsap1b
XM_039803045.1 mRNA downstream 2364 29354120 ~ 29382295 (+) False camsap1b
XM_039803049.1 mRNA downstream 30620 29382376 ~ 29390784 (+) False LOC120560482
XM_039803050.1 mRNA downstream 30620 29382376 ~ 29390784 (+) False LOC120560482
TU87117 other upstream 2042810 27205234 ~ 27301770 (+) True G65084
TU86927 other upstream 2686611 26645020 ~ 26657969 (+) False si:dkey-178e17.1
XR_005639500.1 other upstream 2702099 26614237 ~ 26642481 (+) False cltcl1
TU86791 other upstream 2848252 26494335 ~ 26496328 (+) False c6h22orf39
XR_005639517.1 other downstream 835092 30186848 ~ 30212108 (+) False fbxo21
TU88038 other downstream 895131 30246887 ~ 30250240 (+) False LOC120560820
TU88040 other downstream 896183 30247939 ~ 30250268 (+) False LOC120560820
TU88039 other downstream 896227 30247983 ~ 30251519 (+) True LOC120560820
TU88162 other downstream 1222330 30574086 ~ 30578159 (+) True G65899

Expression Profile