RNA id: TU87931


Basic Information

Item Value
RNA id TU87931
length 1230
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G65713
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 29589007 ~ 29591364 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGAGTTATAAAAGTTGTATTTAATACAAAACATTGACAATTTATTTACATAGCCTatcaagaaaagaaataaaaggatCAGAATATTTATAGCAGTGCTGTAGAAAGTCaggcgtgttttttttttggactggATTGTGAATGTAAAGATAAAGAGAATAATAACCTATAATTCATCATTCACAAGGGTTTTGTCACATCAAGATGGGTCTAAAGGGGACGCAAAACAGGTCTTaaccttgtgtggtccttcgggtcacagggacccaaaggacaacacaagggttatgtacttctgtttattttgttgagaattgcgctctaaaccctgtttcttgtaaagtaagtaaagtttgtttctagagcacatttaaacacagtttaagctaaccaaaatgctgtacaaacaagcactaaagtgctgtattaaccctcgttttgtccttcgggtcaccaggacccaaaggaccacacaaggttTAAAAATCATTACCATACCTAGCTACAAACTGGAGAAAGCATACCCCTGAAACTTTCTACGGGATGCAAAAACTGGCACTACTCCTTGGACAGAGACTAAGGTGTTACTTCTTTAAACCAGTATTTTTCCACCCAAATTACATTCAAATTCTGGGTCATTACTATCAGAAAATGCTGATATAAAAACGTCATTGTTAAGACAAATCCGCATTTTACAGTTTCAGAGTCAGTGTCCTGTTCATTGTTGCCATCTGTGGGCTTTCTTTACAACTTTCTAGCCTCTGACAAGTTATCCAGTTTTACTTCGGCAAGCTATATTACACTGTATCAATAGGCTTATTGGAAATATCACAGTCCAAGTTTTGTGTTAAAGGCCTATCCGCACATTTGAAGAGGAATCCGTCTATCCAGCAAAAGGGTTTGCATGAATGGTCACATCCTTTATCCGTGTTTCAGTCAGGGGTCGGAATGTCTTCTCATTGACAGGCAGTTTCTCCAGTTCATCCAGTGTTTCCAGGCCATCTATAATCTTCCAAACACTGTGTACTTCATGTCTAGATGGGGCTGTTTGGCATATGTGAAGAAAAACTGGGAGCCATTTGTGTTGGGGCCATTGTTTGCCATTGAGACCACTCCTCTTACATTATGCTGAAATAAAAGAAAGCAAAAGAACACAAGTTACAATGTTTAAGACTGACCCCTGATTAAATATTATGTCAAACTTCTTCCTGACATAGGCAAACAAGCGGG

Function

GO: NA

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko04623 Cytosolic DNA-sensing pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639509.1 lncRNA upstream 457791 29072941 ~ 29131216 (+) True LOC120560778
TU87739 lncRNA upstream 483398 29103988 ~ 29105609 (+) True G65570
TU87732 lncRNA upstream 490694 29078426 ~ 29098313 (+) True G65565
TU87618 lncRNA upstream 586827 28985613 ~ 29002180 (+) True G65473
TU87569 lncRNA upstream 741760 28845626 ~ 28847247 (+) True mboat4
TU87952 lncRNA downstream 180275 29771639 ~ 29771864 (+) True G65734
TU87956 lncRNA downstream 220608 29811972 ~ 29812218 (+) True G65738
TU87965 lncRNA downstream 344529 29935893 ~ 29936995 (+) True G65745
TU87967 lncRNA downstream 346253 29937617 ~ 29937843 (+) True G65747
TU87968 lncRNA downstream 346490 29937854 ~ 29938145 (+) True G65748
XM_039802101.1 mRNA upstream 5438 29514026 ~ 29583569 (+) False col27a1b
XM_039802100.1 mRNA upstream 5438 29514027 ~ 29583569 (+) True col27a1b
XM_039802188.1 mRNA upstream 85056 29496780 ~ 29503951 (+) True LOC120560080
XM_039802189.1 mRNA upstream 85056 29496780 ~ 29503951 (+) False LOC120560080
XM_039804028.1 mRNA upstream 93865 29493252 ~ 29495142 (+) True LOC120561062
XM_039802108.1 mRNA downstream 15874 29607238 ~ 29620658 (+) True hscb
XM_039803741.1 mRNA downstream 446188 30037552 ~ 30058804 (+) True scarf2
XM_039803743.1 mRNA downstream 478047 30069411 ~ 30071555 (+) True selenoe
XM_039803742.1 mRNA downstream 480400 30071764 ~ 30074597 (+) True zgc:112294
XM_039803680.1 mRNA downstream 595484 30186848 ~ 30211492 (+) False fbxo21
TU87830 other upstream 237254 29350124 ~ 29351753 (+) False ubac1
TU87117 other upstream 2287237 27205234 ~ 27301770 (+) True G65084
TU86927 other upstream 2931038 26645020 ~ 26657969 (+) False si:dkey-178e17.1
XR_005639500.1 other upstream 2946526 26614237 ~ 26642481 (+) False cltcl1
TU86793 other upstream 3092746 26494335 ~ 26496261 (+) False c6h22orf39
XR_005639517.1 other downstream 595484 30186848 ~ 30212108 (+) False fbxo21
TU88038 other downstream 655523 30246887 ~ 30250240 (+) False LOC120560820
TU88040 other downstream 656575 30247939 ~ 30250268 (+) False LOC120560820
TU88039 other downstream 656619 30247983 ~ 30251519 (+) True LOC120560820
TU88162 other downstream 982722 30574086 ~ 30578159 (+) True G65899

Expression Profile