RNA id: TU87967


Basic Information

Item Value
RNA id TU87967
length 227
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G65747
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 29937617 ~ 29937843 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTACAAACTTGTAATGGTTCAGTCATATTGACATGTTTGTCTTCCACCCTACAAAGTTTTGGCTGCCTATGaattaatgtccaaatattgcttcccagataatgtgattttcaggctgtaaaactgaagtaaTTTCAAAGGCTAAAAATAGGTTTGAACAAAATCTGAGACAGTGCAACAACCTGTAATTCCATTTTAACCCAGAAGACTCCGACAGTGCACAGGCC

Function

GO: NA

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87965 lncRNA upstream 622 29935893 ~ 29936995 (+) True G65745
TU87956 lncRNA upstream 125399 29811972 ~ 29812218 (+) True G65738
TU87952 lncRNA upstream 165753 29771639 ~ 29771864 (+) True G65734
TU87928 lncRNA upstream 322737 29547449 ~ 29614880 (+) True G65710
TU87931 lncRNA upstream 346253 29589007 ~ 29591364 (+) True G65713
TU87968 lncRNA downstream 11 29937854 ~ 29938145 (+) True G65748
TU88000 lncRNA downstream 153855 30091698 ~ 30094746 (+) True G65770
TU88001 lncRNA downstream 159087 30096930 ~ 30097156 (+) True G65771
TU88007 lncRNA downstream 213929 30151772 ~ 30152087 (+) True G65777
TU88026 lncRNA downstream 268773 30206616 ~ 30223076 (+) True G65792
XM_039802108.1 mRNA upstream 316959 29607238 ~ 29620658 (+) True hscb
XM_039802101.1 mRNA upstream 354048 29514026 ~ 29583569 (+) False col27a1b
XM_039802100.1 mRNA upstream 354048 29514027 ~ 29583569 (+) True col27a1b
XM_039802188.1 mRNA upstream 433666 29496780 ~ 29503951 (+) True LOC120560080
XM_039803741.1 mRNA downstream 99709 30037552 ~ 30058804 (+) True scarf2
XM_039803743.1 mRNA downstream 131568 30069411 ~ 30071555 (+) True selenoe
XM_039803742.1 mRNA downstream 133921 30071764 ~ 30074597 (+) True zgc:112294
XM_039803680.1 mRNA downstream 249005 30186848 ~ 30211492 (+) False fbxo21
XM_039803679.1 mRNA downstream 249005 30186848 ~ 30197488 (+) True fbxo21
TU87830 other upstream 585864 29350124 ~ 29351753 (+) False ubac1
TU87117 other upstream 2635847 27205234 ~ 27301770 (+) True G65084
TU86927 other upstream 3279648 26645020 ~ 26657969 (+) False si:dkey-178e17.1
XR_005639500.1 other upstream 3295136 26614237 ~ 26642481 (+) False cltcl1
TU86793 other upstream 3441356 26494335 ~ 26496261 (+) False c6h22orf39
XR_005639517.1 other downstream 249005 30186848 ~ 30212108 (+) False fbxo21
TU88038 other downstream 309044 30246887 ~ 30250240 (+) False LOC120560820
TU88040 other downstream 310096 30247939 ~ 30250268 (+) False LOC120560820
TU88039 other downstream 310140 30247983 ~ 30251519 (+) True LOC120560820
TU88162 other downstream 636243 30574086 ~ 30578159 (+) True G65899

Expression Profile