RNA id: TU88038


Basic Information

Item Value
RNA id TU88038
length 2204
RNA type TUCP
GC content 0.48
exon number 2
gene id LOC120560820
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 30246887 ~ 30251519 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGATCCAACAGCTCCTCGTCTTTCTTGACCTTTCTCTTAGGCTGTTGCTGCTGTGGCTGCTGCAGGGATGCGCTGCAGGCGTTGGTCATGTTTTGATACTGTCTCTTTCTCCTGGTTCTCTCCTCCTGAATCCTGTCCAGCAGGGGACTGGTCCTCCCATCCAGCAAACTACGTGCAATGGCCACATACTCAGGCTGATCCTCTGACTCTGCTGCAGCGTTTCCTCCTCCGCCAGCACATGCTTCATCCTCAATGCAACCACCTTCTTCTGATTGTGAAGGGCTACAGGCCTTGCTGAGATTGTTTAGGTCTTCAAAATACCTATTTTTGAAGTCGTTCTGGCCTGCCTGAAAACAAACATccaaggaagaggaaggagcaCACACAAGTGGCTGATCCTCTTTATTACTCGTTAGTTCTTCTTTCCAACACTCCCTGAACGCAGCAAGTTCGTCCTCGGCCATATTTTTCAGTCATCGTTGATAAAATAGTGTTATAAAGCGGTGTCGTGGGAATGTGTTAGTAATACAGATCAGTTAAGCGAAGCCATAGCTTAGCACCGACGCAACATTTGCACATGTCCTTCTCTATAAACAGTCCGAGGAGAGACAACGCGCTGCTGTACTGAAGTTCCGCAATTTTTTAATTCCGCAGTTTTATCATAGACGCGGCAATTCTCATGGATGGTGTATGATTGTGTGGCCACAACTGGCAATTGTTCTGGATATCATTGCAAGTATTTCCCATCCCATGCCAGCGGGGTGATTATATTTAAAGAATAATACAAAATGCATATTTGTACTTGTTAAAATATAGCAGACGACAACACAACGTCCCAGAACACCCGTACAACAAAAGACTCCTTTGGATCAAACCAGACTGGAGAGATTCAAGAGTTAACCATTGCATCTCTCTTTTGGGAAAAGATGATGTAAACCCCACACCATGTGACACTGTAATGAATAatacagtagagagagagaacgagagaaaggaagagaaagggggggtaggtggggggggggcgcaaACACAGTTAAGGTTTGATGAGAGAAGAAAAGGAGGGTCGTATATGTTCAAGATTTAAAGAGAGAAGACTGGGTGTTCTGTCTGAGAAAGATGTGCTGGCTGCCGATAGACCAGCCTTTGCTCCTGCCCGGTGACTCCACCTGCAGCGCCCGGCGACCCTCGCCGTGCTCGGTGGCTCAGCTGCTCGCGTCTCGCCTGCGGAGGATCGGAGACCAGCTGGAGAAAAGCTGGACGGCCAGGGAGGCGGACAGCGGCTTCAACTGTGGGGGCGGAGGGACGGTGGTGGTGACCGGGACAGGCCACTTGAAGAGCTTCCTGTGCACTGCAATACATTTGACCGTGCTCGTGCTGGTCGTCGCGAGGCGACACCTGTAGGGCGCGAGGCGACAACACCAGCAACAGATGGTGCCTTTAGGACCATGCAAAGAGGAACGGGCTCTCATCATATGCACTAAAAGCAAGAGATGCAGGAGAGTCGGAGGATGCGGTCCAGGATGTAAAGTGCAGCAACTAAAAGACCgaccgaggaggaggaggaggatttaACTTCAAGTCTGACTAAACTCCATGTGTCATGAAGACTTCCTCAGGCCCAATTTGGATGCACTTGAGTTTCATATCGAGCTCACACACTGAACCCCAGCAGCCCTGCAGTCAGCCAGTTGCATGTCCTGCCCCTGCGTGACTCTCTGATTCAGTCATCCCAGTTATAAAACGGTGATGTAATCCTCCCCTGGTAGAGTGGAGGGAAAAGCTTACTAATAGGACTCCTTCAAATTATCACCTCCCACGATGTGAGTGCATGAATGACAAAGGGGTTAGACTGATTAGACCTTTTAATTGTTTGTATGTAAGGCTACAGCAATCCTGAAACATGCACTGAAATAGACCTGTTTATGAGCTTCATAATGCACTGTACTTTTTTGTTACATAAGCTATACTGTAAGTGTAAGCTTGTAAATAATGAGAGGATAAATGGTTTTATAGATGTTTTCTACAGTGTTTAGGTGATGTTTACACATTCTCCTGTGCTTTAGCATTATTTGTTGGGGGCAGTGTTAAGTGGCTTTTCGTCATAAACAAGATACAGGACCTGTGCATCGGAAGCTATGCTGTTAATGCTGTCTGTGGTTTCCAGAAATAAGCTTTCTCTGATATAGCAAGTGTAATGTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88026 lncRNA upstream 23811 30206616 ~ 30223076 (+) True G65792
TU88007 lncRNA upstream 94800 30151772 ~ 30152087 (+) True G65777
TU88001 lncRNA upstream 149731 30096930 ~ 30097156 (+) True G65771
TU88000 lncRNA upstream 152141 30091698 ~ 30094746 (+) True G65770
TU87968 lncRNA upstream 308742 29937854 ~ 29938145 (+) True G65748
XR_005639398.1 lncRNA downstream 136924 30387164 ~ 30387819 (+) True LOC120559990
TU88138 lncRNA downstream 167273 30417513 ~ 30421446 (+) True G65881
TU88140 lncRNA downstream 181146 30431386 ~ 30431741 (+) True G65883
TU88147 lncRNA downstream 289577 30539817 ~ 30540839 (+) True G65890
TU88217 lncRNA downstream 504119 30754359 ~ 30837774 (+) True G65951
XM_039803685.1 mRNA upstream 24362 30197629 ~ 30222525 (+) True tesca
XM_039803680.1 mRNA upstream 35395 30186848 ~ 30211492 (+) False fbxo21
XM_039803679.1 mRNA upstream 49399 30186848 ~ 30197488 (+) True fbxo21
XM_039803742.1 mRNA upstream 172290 30071764 ~ 30074597 (+) True zgc:112294
XM_039803743.1 mRNA upstream 175332 30069411 ~ 30071555 (+) True selenoe
XM_039803686.1 mRNA downstream 13363 30263603 ~ 30267073 (+) True spring1
XM_039803690.1 mRNA downstream 273829 30524069 ~ 30530383 (+) True rfc5
XM_039802559.1 mRNA downstream 304773 30555013 ~ 30557814 (+) True pebp1
XM_039803983.1 mRNA downstream 398133 30648373 ~ 30657730 (+) False suds3
XM_039803985.1 mRNA downstream 398392 30648632 ~ 30657730 (+) False suds3
XR_005639517.1 other upstream 34779 30186848 ~ 30212108 (+) False fbxo21
TU87830 other upstream 895134 29350124 ~ 29351753 (+) False ubac1
TU87117 other upstream 2945117 27205234 ~ 27301770 (+) True G65084
TU86927 other upstream 3588918 26645020 ~ 26657969 (+) False si:dkey-178e17.1
XR_005639500.1 other upstream 3604406 26614237 ~ 26642481 (+) False cltcl1
TU88162 other downstream 323846 30574086 ~ 30578159 (+) True G65899
TU88223 other downstream 607340 30857580 ~ 30886165 (+) False LOC120561064
XR_005639593.1 other downstream 1559392 31809632 ~ 31810279 (+) False dmrt3a
TU88617 other downstream 1876053 32126293 ~ 32136966 (+) True G66231
TU88642 other downstream 2072267 32322507 ~ 32329990 (+) True G66256

Expression Profile