RNA id: TU88294



Basic Information


Item Value
RNA id TU88294
length 4546
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G66015
representative True

Chromosome Information


Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 31130041 ~ 31154168 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GATAACACCTTAACACATTTTCTCGAAGTTATAGAAACACGTGTAGCATGTAAGAGAACAGAGCAATAATCCGAAGAATCAGAGAAGTAGAGGATTCATATTATTATACAGAAGAAACCCAAagtgacagaaagagacaaaggaGAAACTAGAAAGAGCTGACTGCAGAGAAATGATTAAAATCAGGTTGGAAACCCAGGGAATGGGAGAAGAGTGAGAGACACCCTACGAAGAGAAGCCAACTCAGTGTTGTCAGTGCAACTCAGTCACTGGCTGGAGGAAGAGGATGGCAGAGCTTCAGAGTGAACACAGTGGCTCCAGTTCATCTCGGTAAAGCTCCGTCTGACTAAACCGCTGAAAGGAAGGCAGCAGAGCTCGCACTGACCTCAAGAGACCACAGGAGGACAGTTATTGTAGTTTATATGTTGTAGTCTATATGTAGGGCTGCACTATtaatcattttctatcatgtcaGCTTTGATCATTCATACACAATCATGATTTATCATTTGATTTGGTTAAGAATGTATAAAGTGTGGAAACAGTTTGTGATGTAATTGAATAAAGGAAAATGATGTTTTGTTCCCCAAAATCACAGAGGAAAACTACCATGTATCAACATCATGATCATGGCCTCAAACTGTAATCAGAACGGTCATTTTGGTCATAACTGTGCAGCCCtgattaataattataatgaaaGCTTTGTTCTTATTCTGCAGTGATAAACTGCTGTTGTCTCTGACTGGATGACCGGTTACAATTGACGCTAAAGTCAACTTATTGTGCAGCTACGTCAGAAGCGTCAAAGACGTGTCAACCTGCGTGTTTGTGCTCTACTCTGCGTGActgcgccccctgctggagctcATCCACTCTCTGAAACGGCTTCTAATCTGGCCGTTGGACTCAAGTGGCGTTTCTCAAAGTGACATGCAGGCTCAGTGAAGCCGTCGCTCTCGGTGCCGGTGGTTAACAGGCGCTCCTCGTGTTCTCTCAGCTACGAACAAAAGGCAGCCATTCTGCACTGACAACACAAGATCGCCACAGAAAAGCATGCGAGATAATCTTCATcacaccatcatcatcaccaccaccaccaccaccactgtcAACATCCTTATAGTCCCACAGTCATTAACATCATCATCTTGAGACAAAAATAGTTATATGCACTTTAAAAGCTGAGAAAAATAGACAGAGAGGCCGAGTATACCAGCATTCAGTAGAAAatgagaaaacaaataaaaaggaaaacaccTAAAAACAAGTGTCCCGTTGACTGtcatgcaaaaataaaaaatgccagCTACGCTGCTAGTTAGTTGCAGTTATGTAACACTGTGAACTCCCTCGTTCTAAATATGTGAATCTTATATTGATTTTCAAGGCTAGTAAAACACACTAAGAACAGAAGAACAACAACTTTGCAATGTACATGCTGctatctcttcttttttttttggaggcgaggggggggggggtcatgtCTGGTTAGCACGATCACACATGAACGCCTTAGGGTAACCGTTGACCTTTTAGTATTAGAACAGGGCCAAGTAGGCAATAACACGGTTACTGGATGAGACACGAGTATAATACAACAACTCAGTGGttcactttgaaaaaaagcttCATCACctcaaaaaaaagtaaaaaaaaaaaaaagaaggcgaTAAAGCTTCGGAGGGATAGTTCACTCCAAAATTCAATCCTGTATCATATGAGTTTTAAAGTGATAGATGTCCCACTCTGGCAAAGTGGTAATGACCTAAGTGGAAGTAAAACGATGGACatcataaaacagaaaaaaaatgatgtcaaaAACAACTTCCATCTAAAgttgcaaaagaaaaacagcagaaaaagaaaaagtaaatcaCACCATGTTGGTCATTACAGAAAAGCACATGCAGGATGCAAATTCGGTTTACTATCCCGTTAAAACAGTCATGTTTTACATGGAGCGGTGTCCCTTTGAACAGCAATAGACAGTACCTGCACAAGTGCATGAGCTGTACAACcggaaaacaaaaccaaaacaaaaaagagaagaaCACCATAAAATCATTccactaaaataaataaatacatttacaaaataaatagaaaCCTGAGGACTATTCACCAAACTGACTGCCTGGCCTCTTTAATATCTTGGTCTGACCAATAGGGGCGAGACAAATGTGAAGGCAGCCAATGGTGGAGGAGCTGATCGCAAGTCAAATCCCCACAAAAACAGTTTTCAGTGCTGCAAAGTCCATCGGATTAATCCCGTCACCCCTAGCACAAGCACTTTTTATCATAAAAAGctgataaaacatgaaaaacataatacataggaaaaaaaaaaaaaaaagagattaaatcataagaaaaaaaaagccctggGCTGAAGGCAGGGGACTGATATGTCCTCCGAAATAAAGCCTTCTCCTTCCATCTCTCACACAacatacatctccaatatttctCCTGACTTGTAAAGAATACATACTGAGAGCAACAGATACATActttcacactcacacacacacacaaatattgcaCCCTGTGGCAAAGGACTGCCCTGAAAGGAGGAACCAGACCGCCGAACAGAGAAGCCCTAAGCAAACCTCACTGTCTGCAGACGTTTATGAACTCATGGTACGTCGGGAAAATCCTCACACTTGTGGAGGTTTCAAGCATACCTTGATTCTTCATTACTGATATGGGTCTATAAGTGTATGtgctttgaataaacaaacaggcaGCGGCACCATCTTTCTGCACTATAGCTCTGGAAGTGAGAAAGGTCAGGCGTCTTCTGGGATTCTGTTTTTAGAGCACTGACTTCTTTTGTTTGTCAtttggatataaaaaaaaaaaaaagttccctaCAGCACCGAGATCTAGTGAGTTAAATATATCCCAACTTTTAAGAAAAGAGCACTGAGCACTAAATGGGTTTTCAGCTGTCACCTAGCAACAGCAGAAGCCACTAACCCCGGAGCACCTTTTTAACACCAATAGCCTGAAAAACACTTGTGGAAAAACGGACCGACGCAAAACTGAAGTGCTACTGTGAGCAAGAAATAGTGCTCAGTTTCTTGTCGTGAAAAAATATTGCAATTATAACGAGCTACTTTGATGTTACAGTTTGGCGTATTTCTCTTATACCACACCAAAATATTTCATAATAACAGGAAGCCTTTTTCATCAGATCACAACTTGGTTTAACAAGAAAtgacattacatttttgatgtttttgaaattttttttttttagttctttCATATCTGTTAATGAGTTTTACCTAgcagttaaaggtgcagtaggtaagacttatacaactaactttctgtcatatttgcaatcactgctcatgcacattcattctccttatggggggaggggcttaggagaccgttttgtgctttagcagaaagggggtagggactgagaagttgttgatgttcaaattctttggctaagacCTGGATCTTCgaaatcctacctacggcacctttaacatGATCAGATAAATGAGGCATTtagtaattttatttattttattagtatttttacaATAGGACAGCCTTGAATAAATGGTTTGTTGTATAAAAACACTATTATCCCAACATTTTAGTGTCCAGTTAAACCTGTTTATGTTTCTCTGGTCAAAGATTAGCCTAGTCCAGAACTTCACTTTAAAACAGGACTGGGATTTGTGTCCATGCAGCCTGTCGTGCCCCTCCACTTCATTTAGGAGAAATGATGCCACCTGTAACAGTTCTTTCTTCAGTATAGCCACATGTTTAAATAATGTTCTTAATGTATGGTTCTATGTACACGACTGTTCTCAATCAGAGCAGAATCTGACTTCAAATATCTCATCCCAAGAATTGAATTCAAATCAAATGATTCCTTTAAAGAATCATAGTCGGTTTCTCTGATATTGCCGACGATATTTCCTCTTTGGACCGGATGCTTTTCTGGTTGCAACATGGAACATACAAATAATTTCTTCTTATATAACAACACACCAACTTATTTTGTGATGATGTGAAAAGTAGATGTGTTATTATAATGTATAGTTTCTTGTTAAAACAAAATAAGGTATCTTGTTATATCAACAAAATGTTGTCCCTGTAATgagaaacatatttttttgtcaatGGTGGCAGCAATACAAATCAAGGAACACTGTCACTAACAGGAAAACAAGTTTTTCTTCGTCTTTAGAGCTCACCATTCAGGATGCGAAAGCGCAGGGCATTCTACCATTATAGTGTTATCCATGAAGATGGAAAAGtaagatgatgatgatcatgATATAACTCTTGTTGCATGCCGTTTTGTTTTGTAAGTGTGAAATGTTCAGTTTGAGGCACTGAGCTCAGCTAACCTCGTCTCCGGCTGTTTACTTTGCAGCGAGGGAAAAGCAACTGGTTCCTTAAACTGTACAGTAATCATGTTTGGACTAGAACACACTTTGTGTCTGGTTTAAAtaaccactcacacacacacacacacacacacacacacacacacacaaaaacacac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU88228 lncRNA upstream 220571 30906356 ~ 30909470 (+) True G65958
TU88229 lncRNA upstream 220571 30906356 ~ 30909470 (+) False G65958
TU88230 lncRNA upstream 220571 30906356 ~ 30909470 (+) False G65958
TU88217 lncRNA upstream 292267 30754359 ~ 30837774 (+) True G65951
TU88147 lncRNA upstream 589202 30539817 ~ 30540839 (+) True G65890
TU88378 lncRNA downstream 147342 31301510 ~ 31301746 (+) True G66072
TU88377 lncRNA downstream 156775 31310943 ~ 31311447 (+) True G66071
TU88374 lncRNA downstream 163408 31317576 ~ 31318474 (+) True G66069
TU88375 lncRNA downstream 163408 31317576 ~ 31318336 (+) False G66069
TU88405 lncRNA downstream 197030 31351198 ~ 31409156 (+) False G66092
XM_039804654.1 mRNA upstream 1281 31126860 ~ 31128760 (+) True LOC120561480
XM_039804653.1 mRNA upstream 5367 31122558 ~ 31124674 (+) True LOC120561479
XM_039804196.1 mRNA upstream 8130 31117825 ~ 31121911 (+) True si:dkey-174n20.1
XM_039802150.1 mRNA upstream 122744 30928746 ~ 31007297 (+) True znrf3
XM_039802151.1 mRNA upstream 122744 30928746 ~ 31007297 (+) False znrf3
XM_039802031.1 mRNA downstream 83100 31237268 ~ 31241040 (+) True LOC120559964
XM_039803819.1 mRNA downstream 119730 31273898 ~ 31300445 (+) True hs3st1l2
XM_039803820.1 mRNA downstream 143236 31297404 ~ 31300445 (+) False hs3st1l2
XM_039803436.1 mRNA downstream 161131 31315299 ~ 31316422 (+) True LOC120560681
XM_039804031.1 mRNA downstream 302332 31456500 ~ 31461444 (+) True LOC120561065
TU88223 other upstream 243876 30857580 ~ 30886165 (+) False LOC120561064
TU88162 other upstream 551882 30574086 ~ 30578159 (+) True G65899
TU88039 other upstream 878522 30247983 ~ 30251519 (+) True LOC120560820
TU88040 other upstream 879773 30247939 ~ 30250268 (+) False LOC120560820
TU88038 other upstream 879801 30246887 ~ 30250240 (+) False LOC120560820
XR_005639593.1 other downstream 655464 31809632 ~ 31810279 (+) False dmrt3a
TU88617 other downstream 972125 32126293 ~ 32136966 (+) True G66231
TU88642 other downstream 1168339 32322507 ~ 32329990 (+) True G66256
TU88651 other downstream 1210692 32364860 ~ 32369984 (+) True G66263
unassigned_transcript_266 other downstream 1417520 32571688 ~ 32571759 (+) True trnap-ugg

Expression Profile