RNA id: TU88405


Basic Information

Item Value
RNA id TU88405
length 381
lncRNA type inter_gene
GC content 0.58
exon number 2
gene id G66092
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 31351198 ~ 31409156 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtttctctcacacacacacacacacacacacactcactcactcactcactcctcctcccctcctcagCATACATTCAAGCGTAGTAGTGCATGCGTGCAAAAGGAGTGTGTAGGGGGTCAAACGCTGTTTCCCAGCTGGCTGTGGTGGTTGGCTGTGTGCGGTGAGTTCTGCTCGTTGAGAAGGAGAAGCGTTGTCTCGTCCGGACCGTTCTCCGTAGGCGTGGAGTCTGCTCCCAGGTCCgtgatggtgatggtggtgtTGGCGGTGGCGGGGGGAGTGGTTTGATCCAGGTTAATCGTGTTGTGGCTGCTCTCTGGGGACTGGGGCGTGCTGTCCAGAAGGGACGCCATCAGACCGTTCTGGTACTGGGCCCGTGTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88374 lncRNA upstream 32724 31317576 ~ 31318474 (+) True G66069
TU88375 lncRNA upstream 32862 31317576 ~ 31318336 (+) False G66069
TU88377 lncRNA upstream 39751 31310943 ~ 31311447 (+) True G66071
TU88378 lncRNA upstream 49452 31301510 ~ 31301746 (+) True G66072
TU88294 lncRNA upstream 197030 31130041 ~ 31154168 (+) True G66015
TU88421 lncRNA downstream 799 31409955 ~ 31418260 (+) True G66107
TU88467 lncRNA downstream 52642 31461798 ~ 31510356 (+) True G66117
XR_005639425.1 lncRNA downstream 69345 31478501 ~ 31485001 (+) True LOC120560111
XR_005639426.1 lncRNA downstream 69345 31478501 ~ 31485001 (+) False LOC120560111
TU88479 lncRNA downstream 350032 31759188 ~ 31763725 (+) True LOC120561307
XM_039803436.1 mRNA upstream 34776 31315299 ~ 31316422 (+) True LOC120560681
XM_039803819.1 mRNA upstream 50753 31273898 ~ 31300445 (+) True hs3st1l2
XM_039803820.1 mRNA upstream 50753 31297404 ~ 31300445 (+) False hs3st1l2
XM_039802031.1 mRNA upstream 110158 31237268 ~ 31241040 (+) True LOC120559964
XM_039804654.1 mRNA upstream 222438 31126860 ~ 31128760 (+) True LOC120561480
XM_039804031.1 mRNA downstream 47344 31456500 ~ 31461444 (+) True LOC120561065
XM_039802281.1 mRNA downstream 75907 31485063 ~ 31489526 (+) True LOC120560109
XM_039802283.1 mRNA downstream 75907 31485063 ~ 31489526 (+) False LOC120560109
XM_039803521.1 mRNA downstream 104152 31513308 ~ 31565163 (+) True LOC120560726
XM_039803081.1 mRNA downstream 160886 31570042 ~ 31660267 (+) True dapk1
TU88223 other upstream 465033 30857580 ~ 30886165 (+) False LOC120561064
TU88162 other upstream 773039 30574086 ~ 30578159 (+) True G65899
TU88039 other upstream 1099679 30247983 ~ 30251519 (+) True LOC120560820
TU88040 other upstream 1100930 30247939 ~ 30250268 (+) False LOC120560820
TU88038 other upstream 1100958 30246887 ~ 30250240 (+) False LOC120560820
XR_005639593.1 other downstream 400476 31809632 ~ 31810279 (+) False dmrt3a
TU88617 other downstream 717137 32126293 ~ 32136966 (+) True G66231
TU88642 other downstream 913351 32322507 ~ 32329990 (+) True G66256
TU88651 other downstream 955704 32364860 ~ 32369984 (+) True G66263
unassigned_transcript_266 other downstream 1162532 32571688 ~ 32571759 (+) True trnap-ugg

Expression Profile