RNA id: TU88479


Basic Information

Item Value
RNA id TU88479
length 4311
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id LOC120561307
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 31759188 ~ 31763773 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTATATTTAACACAAGGGTGATGTTGGAGCCATTTCACCACTTTGTTTGTATATGCTTCCATATTTGTTATGTCAAGGTGCAGTTTTATGTTTGAGCACTGGGTGGAACATGGCCTTTGGGAAGGCATAAAGCTAATCAgccacaggtacacaggtgtGTGGAAAACGGGGAAAGCAGACCGCTTTTTACCGTGTCAGTCGGGTCAGTCGTGTTTGTCATGTCAGTTTGGTCAGGGTTTCAGTTGTTTGACAAGGAAACTAAACCAGAAATGAAAATGGACTCTATGCTTGCGTGACGGTAAGCAGGCCGTTACAGAAAGTAAATGGGTCACAGCACCGAAATCCAAACAAATTGTGGACTTTAAATATTGGCGCGCAGAACACGCGTCCAAGCAAGTTCTCCCAATTCCTCCATATTGGCCTAATGTCGCCTGAGATTAAAGACTCTACAGGCGGTATTCTTTCCTCCAGAGCCCGTTTATCTATTATCACCATCATTTTCTGTTTCTACATTCAGTTGTCGACAGTGCTGACAAAGGAAACTAAAGTAGGTGTATGTGGAGACCCTAACAAACCTGTGCAGAGGCACGTGGGTGCTGCTGGACCCAGCTGCTCCCATCCTGGAGAGTTTGTGTTTCAGTGCGGGGCGGGGTACGAGGCCTAGGTCACCTGGCCTGTAGCGGGCCAGCTCGAACTGAAAACTCAAAGCTGGATTCAGGGTCACTTCTCTGTAAAGACACGGGGAACAGGATGAGGGTGACAGAGCAGCACCAACTCAGAAGAACAGAACTGTACCGTTGTGATGATTGGCCTCATTGGCAACATCTAAAACTTGTATTTCTTTGTTGTGATTGGGTAATCAAAACTTCTGCCAAGGAAGTACACTAAAACATGCCGTCAAccacattaaagcaacactaaagcacttttcccgcttcggtccccctacaggttggaagcggaattgtccattaccgctgtcgtaatgtctcattcgaactacagatccgctagcctggtcctaccggACTCTCATACATTTCATTtatacagagagtctggccactctccattgcgggtgttaacttccttgaaggcgggtactctgttgaagtttaaaactattggatctgcccagagccactctggtagcctggctccgccctcctacgtactgtctggtaggaccaggctaacaagAGGGGACgtcacgacctcaacgtcatcgttctcagccactcgctctgttcactgattggaccggtaaagatttggctggagaaaacccaagaatataccacaaacccagacggagtactgaaggaaaattaaaattgagcggaagtacgtaggagggcggagccaggctacagatccgctaccccaggggtgtcaaactcattttcgctaagggccacactagaaaaagagaatcacaccaagggccacacatgtagagtttattgacatgcttttgttacttcttttttaacatgcattttttttcctcctttttgttccaacttttttgtggctttctcagacatttgtcacctttttgtaaatttgttgctttttccaatatttttttaatgttttttgttgcatttttgttgaaatgaagccctacaaaagtcatcaaaagagtttcttagccatcatagaatttagcaaatcaagtaaaacgataattttttttttaacaataacctgtttcacagcctgaatatgaaaactctgctTCTGGGAGTCTCAgttggcaaatctgccatattctgctttgaaagtcaggtaattgcagtttaaaaaaacactttcctgtgtttttggtttggcacaCAACTAGACGgacaaaatttattgtgaacccaaactgATATAcagggccggatctaaatctgaaaggggccggatttggcccgcgggccttgagtttgacacatgtgcgctacccgatctggcaaacttgcataatgtaatgtaatggacaattccgcttccaacctttagggggaccgaagcgggaaaagtgctttggtgttgctttaaagtctACATGTAGTTGAGAGATACTTTAGTGATTGTATGACCTGTCTGCTGCAGGGTCAGAGGTCTGCTGCTCATCCAGCTGGTCCTTCTCTGCGGTGGTGTTGGTGGGTGTGGGCCGGTCCAAGACCACCAGCAGCTTCTCCATCAGCTGCTTCCACCGGACAACAGAGTCCACCTCCGAGCCCTGGTCTGTAGGAGCATCCTGCAGGGAACGGAGCCAACATCACGGGCTGAAGTCgtaaaaacatttcaaagagGCTGAAACAATCCCATCGCATTATTAGGCTACTTAAGCAGCAACTTCACATTTGGAGATATTTCAAATGTCAAGATTCCTCTCGGTTACATACAACGAAAGTGAGGCCGTTATTCCCAAATCTATTCTGTGTAATTTGGGTTTAATACCTTCTTACACTTCTACTAGCTAATCCTCTCAATTACAGTAGTTTAGCAGTAGAAATGCTTGAGTGTATTCCTTAGCAATTGAGCTGGTTTGATGAAATGGATCATGTTGTGCAGATTGGTCATCATGATCATAAGATCATAGGGTTTAGAACGGATGTGTTGTACAGAAGTTAGTGAAGTTGCAGTAGGGAATTAGGGAAATTATTTTACTTAATGACAGGGAGGGCTAAGCTAACCTGGAAATCTTATTGATAAGAATCTTAAACATCCCAATTTTTACATAACAACCAACTAACGATGTTgccaaaaaaaagatttttattaGTTAAAAAGGATAATAAATAAGGTGTAAGATGTATATCtatttcagacatttttttgtGAACCTCTCTGTCACAGAAAAATAGCACtgcaaaaagcaacaacaaaagtgcaaaaagaaaagaaaattctgCCAATGGGCTGAGATAACTGACAACCTTCCCttgaaagtgtttgtgtgtccagatgttcctgacttttttttttttttttttgttttaccatCAGGGCTTGTCTGAGAGTGATGGCTGCCTCCTGCATGATGCTCTTcatcctgctcctcctcttcctctcctgctgtaGCTCTGCCTCCTGTCCGCTCACCTTGGCTCTGTTTTTACTGCACTGCTCGGACAGCGAGGTCCGGTCCTGTCTGAAAACACAACACTAACTGTGGGTAACCCacccatttttgttttgttttgatttgtcCAGAAACTTATATATTGGAAATTTGCGATTCTTTTTTTCTCGGTCTGTAAATCATTATTGAGACATTCTTGTGAATTGCTCTTAAAATTTAAATGAATTGGACCTTGAATAAAGCACGAGTCAGTGGTATGTTGACAGTAAAGACTTGACAGGAGTGAACTTTGACCTGAGTGCCTCCATCTCAGCCAGGACTCCTGTGTGTTTCGTCTGAAGCTGCTCGAGTTCTCGCTTACAGTCCTTCAGCTCCGCCTGCAGCTGCTGACACTTTTCTGTAAGCTGCTCCACCACCTGATAGAGTGAAGATGAAGTATATAGTAtagaagtatatatatatatatatatatatcgaaaACTGCAACACCCACTGGATCCGATCCCACATTGGGCCCAAATGATGAGTAGATGGAGATCTGTTACTCTTACCTTCTTGCGGATGCAGCTCTTGCGGGACGTCTCGCTGAGCATTTGCTCCAGGATATCCACATCCACACTGAGCCGACTCTTACGCTCCCGCAGGGCCGAGTTCTCCTCCATCAGGACATGTGTCTGCTCTGACAGCTGGCTGATCTGAGCCTTGACCTCCGAGTTCTCCTGAAGGGCCAACCTGGTCGTCTCTGGGACCTTCTGGTCCACCAGGTGCTGTACCTCTGCCGCCATGGCCGCCACATGGCTCTCCATCTCCTTCTCTAACCTTTTGAGGTGCTTTCATCTCCAGGCTGTGGATAGCAGCGTTGTGTTCCTCGTTCTGATTGGCCAGCTGCTTCTCCAGAGACTCCATGTTGGACGTCAGCTGCTCCTTCTGCTTCTGAAACTCCTCCAGATTAGCCAGCCTCGTCACTTGGAGCACGAGAGAAGAGTTAAAAGTTCACTCACTAAGGTTTAACTCAACCAATGAGTTTGTTTCTGCATCCAGTTTGTGTTAAATGCAGTGTACAGGCTGCTAAACTGTTCAGCCACCTAGCTGATGCTACAGGTCCAATGAggtaaacaaaaaacatttaataacaaTGTATTGCTATGTAATGGTATCATTGTACCTATCATAGTACCTATGTAATGCTGTCTAGAGTTAACTAGGTAGAAATATATTGTCAGTCCTTGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88467 lncRNA upstream 248832 31461798 ~ 31510356 (+) True G66117
XR_005639425.1 lncRNA upstream 274187 31478501 ~ 31485001 (+) True LOC120560111
XR_005639426.1 lncRNA upstream 274187 31478501 ~ 31485001 (+) False LOC120560111
TU88421 lncRNA upstream 340928 31409955 ~ 31418260 (+) True G66107
TU88405 lncRNA upstream 350032 31351198 ~ 31409156 (+) False G66092
TU88608 lncRNA downstream 443194 32206919 ~ 32209511 (+) False adamts3
TU88639 lncRNA downstream 485276 32249001 ~ 32249240 (+) True G66253
TU88641 lncRNA downstream 527047 32290772 ~ 32291019 (+) True G66255
TU88699 lncRNA downstream 706634 32470359 ~ 32470825 (+) False mapk1
TU88701 lncRNA downstream 707460 32471185 ~ 32474048 (+) True G66294
XM_039804361.1 mRNA upstream 1684 31699526 ~ 31757504 (+) True kank1a
XM_039804359.1 mRNA upstream 1684 31699526 ~ 31757504 (+) False kank1a
XM_039804360.1 mRNA upstream 1684 31706370 ~ 31757504 (+) False kank1a
XM_039804362.1 mRNA upstream 1684 31726097 ~ 31757504 (+) False kank1a
XM_039804358.1 mRNA upstream 84073 31670525 ~ 31675115 (+) True ctsla
XM_039804489.1 mRNA downstream 6567 31770292 ~ 31802453 (+) True dmrt1
XM_039804490.1 mRNA downstream 6567 31770292 ~ 31802453 (+) False dmrt1
XM_039804487.1 mRNA downstream 44070 31807795 ~ 31811553 (+) True dmrt3a
XM_039802170.1 mRNA downstream 56944 31820669 ~ 31825718 (+) True dmrt2a
XM_039802942.1 mRNA downstream 142397 31906122 ~ 31966734 (+) True smarca2
TU88223 other upstream 873023 30857580 ~ 30886165 (+) False LOC120561064
TU88162 other upstream 1181029 30574086 ~ 30578159 (+) True G65899
TU88039 other upstream 1507669 30247983 ~ 30251519 (+) True LOC120560820
TU88040 other upstream 1508920 30247939 ~ 30250268 (+) False LOC120560820
TU88038 other upstream 1508948 30246887 ~ 30250240 (+) False LOC120560820
XR_005639593.1 other downstream 45907 31809632 ~ 31810279 (+) False dmrt3a
TU88617 other downstream 362568 32126293 ~ 32136966 (+) True G66231
TU88642 other downstream 558782 32322507 ~ 32329990 (+) True G66256
TU88651 other downstream 601135 32364860 ~ 32369984 (+) True G66263
unassigned_transcript_266 other downstream 807963 32571688 ~ 32571759 (+) True trnap-ugg

Expression Profile