RNA id: TU88641


Basic Information

Item Value
RNA id TU88641
length 248
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G66255
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 32290772 ~ 32291019 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atctgacaacacggagactaaatacacaaggtaacgagggtgaaacaagggacaggtgacacgagggctcaggaacaggtgaaacacatcagggtgggacagacaatcacaaaggtgggaaaacacaaggcaggaagtaaatcAAGACATGGTATAGGAGAAAAcagttttacaaaataaaacaggaaaccgaagcataaaacatacacaaggaTGAAAACAGGGTAAAACGCAACAGAGAACACAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88639 lncRNA upstream 41532 32249001 ~ 32249240 (+) True G66253
TU88608 lncRNA upstream 81261 32206919 ~ 32209511 (+) False adamts3
XR_005639580.1 lncRNA upstream 526999 31762986 ~ 31763773 (+) False LOC120561307
TU88479 lncRNA upstream 527047 31759188 ~ 31763725 (+) True LOC120561307
XR_005639425.1 lncRNA upstream 805771 31478501 ~ 31485001 (+) True LOC120560111
TU88699 lncRNA downstream 179340 32470359 ~ 32470825 (+) False mapk1
TU88701 lncRNA downstream 180166 32471185 ~ 32474048 (+) True G66294
TU88702 lncRNA downstream 183468 32474487 ~ 32475080 (+) True G66295
TU88703 lncRNA downstream 187473 32478492 ~ 32487187 (+) False LOC120560610
TU88700 lncRNA downstream 220600 32511619 ~ 32515505 (+) True G66293
XM_039803991.1 mRNA upstream 81238 32032576 ~ 32209534 (+) True adamts3
XM_039803993.1 mRNA upstream 81238 32032576 ~ 32209534 (+) False adamts3
XM_039803992.1 mRNA upstream 81238 32032576 ~ 32209534 (+) False adamts3
XM_039803995.1 mRNA upstream 81238 32032576 ~ 32209534 (+) False adamts3
XM_039803994.1 mRNA upstream 85020 32032893 ~ 32205752 (+) False adamts3
XM_039803565.1 mRNA downstream 113368 32404387 ~ 32426382 (+) False rufy3
XM_039803568.1 mRNA downstream 113371 32404390 ~ 32422019 (+) False rufy3
XM_039803566.1 mRNA downstream 116147 32407166 ~ 32426382 (+) True rufy3
XM_039803569.1 mRNA downstream 116152 32407171 ~ 32422019 (+) False rufy3
XM_039803502.1 mRNA downstream 149356 32440375 ~ 32470827 (+) True mapk1
TU88617 other upstream 153806 32126293 ~ 32136966 (+) True G66231
XR_005639593.1 other upstream 480493 31809632 ~ 31810279 (+) False dmrt3a
TU88223 other upstream 1404607 30857580 ~ 30886165 (+) False LOC120561064
TU88162 other upstream 1712613 30574086 ~ 30578159 (+) True G65899
TU88039 other upstream 2039253 30247983 ~ 30251519 (+) True LOC120560820
TU88642 other downstream 31488 32322507 ~ 32329990 (+) True G66256
TU88651 other downstream 73841 32364860 ~ 32369984 (+) True G66263
unassigned_transcript_266 other downstream 280669 32571688 ~ 32571759 (+) True trnap-ugg
XR_005639474.1 other downstream 786227 33077246 ~ 33112816 (+) False cds1
TU89079 other downstream 1484906 33775925 ~ 33776398 (+) True G66578

Expression Profile