RNA id: TU88651


Basic Information

Item Value
RNA id TU88651
length 2853
RNA type TUCP
GC content 0.42
exon number 2
gene id G66263
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 32364860 ~ 32369984 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTTGAAAACAGCCAGCAAAGCCTAAATATCAACTTGACATACAGCATAATAAGTTATCAGAAAGTTTTCTGTACATTTgctaattgtttcagcacttAACTACATTGTTACAAGAGTTCATCAAGGTTTCTTTTGGAGAACAtttggagacaaaaaaaatagcTTTTTCTCTGAGGAgcaacaataataaacaattgAAATgcataaattaataaaacaaaatttgaATTATGCTGTTCTTTCATGTCAGCATTTTACACAACAGCCTTAATTTAGTAACAACTCAGAGCAAATAAGTGAGTTGACATAAAAAGTCTCTTCATTCTTGTAAGGATTCAATTAGTGCCACCCAGACTGTAATGCTCCTTTATGAAAGTCTTCGTGGCATTATGAAACGGCTCAATCAAAAAGGGTCTTGCCTATTTTTAAAAAGAAGGTCAGAAGCCTGAATGCTGCCGCCTCGGGGAGTGTCTCTTCTTGTGGAGGAGTAGTGCTGTTAATGGCCCATCAGTCAAGTCGGCTGGCCTCAAAGCAAGAGACCCAGCTCCGCTCGGCCTGTACAGTCCATGCAGCACACTCAATTACTTCACATTAATCCCTCCAAGTGGTAACTCTTCCTCCTGCTCTCTCATGCAGACACAAATGAGGAGGGTTGGTTGTTCTCAAATTAGGACGTTTTTGTGTGTCCGTTTACAAACTACTATTTCAGTGCCTCAGTGTTCAAATAAAGTACAGTTTAAGCTGGACTTGACTCAGAGCCCTGACCTTTTGCTACTAAAACAAAGAAGAGGAAATAAACCTCTGAGCCCTGTGTGCGAAATGCATCAATTCATAAACCTGCACGCAACACTACAGAGCAGCTcttcatacagtatacagttcATCACAGAGCAGACAAAATCAAACTGGCAGACGGGTTCTCTGCTCACCTTCGTCAAAAGTCATTGTATAacagtggggaggggggggggaatactTGTACACACACCTAAAAAATACTTTGCATAATTGTAATATTCACTGGAAATGAGTTATTATACATTAAAGCATAATCTTTTTATGAACATAATGGTGATCAGACTGTTTTGTAACAatgaaacaacaaaatgtttacatatttaaatgtgttttctatGACTGTATTTGTCAgtgttttttaattgtttgtttcaacaGGTATCCAATCCTGGCAATTAAAGgtatggttaggtttaggcacctcAAAGCACTTggttgagaaaagaaaaacctcATAACCATGTTCCTGTACTTAACATTGTTACTTGAGCTCTGGGTAAGGTTAGTTGACTAACTATGTGGTAATGGGTAAAAATTCAATCCACAGGTAAAACAtatcaaaattaatttgataGTCAAGGGGATTAATACTCAGCCGgtgtaaacagtttttaatgtctTGGCTCtaaaacttaaagtgctcatattatgctcattttcaggtttataattgtatttagaggttgtaccagaataggcttatgtggtttaattttcagaaaacaccatatatttgttgtactgcacattgctgcagctcctcttttcaccctgtgtgttgagctctctgttttagctacagagtgaggcatctcacttctgttccatctttgttgggagtcgcacatgtgcagtagctaggtaagtactgctagctagtcagttgcagagcatgaggtcgtgccacgctagcagctataacgtgtgttacaaagtgacgcacgttcgtcacggaagtaaaggctggactacaatagagctgtttggagcagtttgtgaacagtgttttctgttggagatggtaagtccctttggggtggactttgggctttttcactttgtaaacctataacgtgcacaaaaagatacataacacaataaaggaaagggaaaaagccaaaaagcataatatgagcactttaagtaattTCAGTTTGGGCTTAAAGAGGTCAAGTCAATTATtgtaaaaaaacactaacttcCTGCTGATGACCCCCAGTCTCCAGTGTAAAAACCATGTGCTTAAACCCAATAACTAAACCTGAACATTGTCTGGCATTACATGTCCTCATAAAAGATACTTGCCAATGCTAATTAGCTTTACCCAAATGTAATGCAATTTATATTGTGACAGATGTAAGTTGATAAGTGACCTGCGGCCAACCTACCAACAACCTGAGGTAGAGTAGAAGCTTCCATGTCGAGCATGATGGTGCCTTTCTCTATGCACGTCCGGAGTTCAAAAAGGCTATGTAAGGACAACGTGGCCACGTGTGGTTTACTCCAGCGTTCACCTCCTTTCTCTACCTTCTCCTCAAACTTTATCCACCTGGCCGTCTCCTTCCACTCCATCTCCTGTCCATCCACTGACAGCAGCTCATCCAACTCAGTGAAGAGTTGTGGGGGTGCCGGGCCGTCATCCTCCTCACCGAGGATGAAGCGGATCCTCTCAGCTGCCGGCGAGACTGCGGAGAGAGGAAAAATACTGCGGTTCATAGGCTGGCAATGGTGCCCATTGGGCAAGGGTTTGGGCACCAGTTTCCCCTCCTCAGCTGGACCCTTCCCGTTGACCTCAGTAGGAGGTGGAGGGATTTTCACCATgatctcctctcctttctcttctgtGTACTCTTCCTTTTCCTCCTTCTCGTTTTCCTCttggttattgttgttgttggacaTATTTAAAACCTTAATGACCCCCCCTTTACTCTCCAAATCCACAGATAACAGTCAGCAAGCTACACAAGCTCACCAGAGTCCCAAAGCAGCAGCTAGACCCTCATTAAAGTCTCTCAGCTCTCAGCTGCCTGCTCCAGCACTTTGTGGACCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88641 lncRNA upstream 73841 32290772 ~ 32291019 (+) True G66255
TU88639 lncRNA upstream 115620 32249001 ~ 32249240 (+) True G66253
TU88608 lncRNA upstream 155349 32206919 ~ 32209511 (+) False adamts3
XR_005639580.1 lncRNA upstream 601087 31762986 ~ 31763773 (+) False LOC120561307
TU88479 lncRNA upstream 601135 31759188 ~ 31763725 (+) True LOC120561307
TU88699 lncRNA downstream 100375 32470359 ~ 32470825 (+) False mapk1
TU88701 lncRNA downstream 101201 32471185 ~ 32474048 (+) True G66294
TU88702 lncRNA downstream 104503 32474487 ~ 32475080 (+) True G66295
TU88703 lncRNA downstream 108508 32478492 ~ 32487187 (+) False LOC120560610
TU88700 lncRNA downstream 141635 32511619 ~ 32515505 (+) True G66293
XM_039803991.1 mRNA upstream 155326 32032576 ~ 32209534 (+) True adamts3
XM_039803993.1 mRNA upstream 155326 32032576 ~ 32209534 (+) False adamts3
XM_039803992.1 mRNA upstream 155326 32032576 ~ 32209534 (+) False adamts3
XM_039803995.1 mRNA upstream 155326 32032576 ~ 32209534 (+) False adamts3
XM_039803994.1 mRNA upstream 159108 32032893 ~ 32205752 (+) False adamts3
XM_039803565.1 mRNA downstream 34403 32404387 ~ 32426382 (+) False rufy3
XM_039803568.1 mRNA downstream 34406 32404390 ~ 32422019 (+) False rufy3
XM_039803566.1 mRNA downstream 37182 32407166 ~ 32426382 (+) True rufy3
XM_039803569.1 mRNA downstream 37187 32407171 ~ 32422019 (+) False rufy3
XM_039803502.1 mRNA downstream 70391 32440375 ~ 32470827 (+) True mapk1
TU88642 other upstream 34870 32322507 ~ 32329990 (+) True G66256
TU88617 other upstream 227894 32126293 ~ 32136966 (+) True G66231
XR_005639593.1 other upstream 554581 31809632 ~ 31810279 (+) False dmrt3a
TU88223 other upstream 1478695 30857580 ~ 30886165 (+) False LOC120561064
TU88162 other upstream 1786701 30574086 ~ 30578159 (+) True G65899
unassigned_transcript_266 other downstream 201704 32571688 ~ 32571759 (+) True trnap-ugg
XR_005639474.1 other downstream 707262 33077246 ~ 33112816 (+) False cds1
TU89079 other downstream 1405941 33775925 ~ 33776398 (+) True G66578
XR_005639528.1 other downstream 2144026 34514010 ~ 34527405 (+) False cfap157
TU89395 other downstream 2395962 34765946 ~ 34773700 (+) False LOC120561070

Expression Profile