RNA id: XM_039803502.1


Basic Information

Item Value
RNA id XM_039803502.1
length 2101
RNA type mRNA
GC content 0.47
exon number 9
gene id mapk1
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 32440375 ~ 32470827 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCCGCTACTCGCTCCTGCCTGCGACAGCACAGCAGTGGTGTGGTCGCTCTGAACGCACATTAacggaaagaagaaaaacactaaGTGAAGGCCTTTACCACACCGAAAACTGTTGCAGTCACAGCGACGACggatataaaaacacatttatttgttttctaaTCTTAGTTGCTGTGTTTTTCATTTGATAGccttgtaaaaaaagaaaaaagccagAGCTCATAATGGCGACAGCTGCGGTGTCTGCCCCTGCTGGCTGCGGCCCCAGCCCCGGGTCGGGAACAGAGCTGGTCCGCGGGCAGGCCTTCGACGTCGGGCCTCGGTACAGCAACCTCTCCTACATCGGGGAGGGAGCCTACGGCATGGTGTGCTCTGCCTATGACCGGGACAACAAGATACGTGTGGCCATTAAGAAGATTAGCCCTTTTGAGCACCAGACGTACTGCCAACGCACCCTGAGAGAGATCAAAATCCTGCTGCGCTTCAAACATGAAAACATCATCGGCATCAACGACATCATCCGCACACCAACCATTGACCAGATGAAGGACGTATATATTGTCCAGGATCTCATGGAGACAGACCTGTACAAGCTCCTGAAGACTCAACACCTGAGCAACGACCACATCTGCTACTTCCTCTACCAGATCCTACGAGGGCTCAAGTACATCCACTCTGCCAACGTCCTGCATCGCGACCTGAAGCCCTCCAACCTTCTGCTTAACACCACCTGTGATCTCAAGATCTGTGATTTTGGTTTGGCTCGTGTGGCTGATCCTGACCATGATCACACTGGTTTCCTGACAGAGTATGTAGCCACCCGTTGGTACAGAGCACCTGAGATCATGCTCAACTCCAAGGGCTATACCAAGTCCATAGACATCTGGTCAGTGGGTTGCATCCTGGCTGAGATGTTGTCCAACAGGCCAATCTTTCCTGGGAAGCACTACTTGGATCAGCTTAACCACATTTTGGGGATCCTGGGTTCTCCCTCTCAGGAGGATCTCAACTGCATCATCAACATTAAGGCCAGGAACTATCTTTTGTCGCTGCCTTTGCGCTGCAAAGTGCCGTGGAACCGCCTCTTCCCCAACGCTGATCCCAAAGCTTTGGACCTGTTGGACAAGATGTTAACCTTTAATCCTCACAAGAGGATTGAGGTGGAGGAGGCCCTGGCGCACCCTTACCTGGAGCAGTATTACGACCCCACGGATGAGCCTGTTGCCGAGGCCCCATTCAAGTTTGACATGGAGCTGGATGACTTACCCAAAGAGACGCTGAAGGAGCTCATCTTTAAAGAAACTGCACGTTTCCAGTCCGGCTTAAGGTCCTAACATCTCACACAGATGTTTCTGTGGACCGGCTTTGGCATTgctactcctcctcctcacctccACACTTTTgctgtgatatatatatatatttttgggggttttattTTACTATCCTGTTGTCCACATCACCTGGATTCCTTGGGTCTCACTCGTCAAATCCAATTTGCTCAGGAATGGCGTCaggaatcaatcaatcaaccattctcttgtctctctttctatttctcttttctcgctctctccctgaggtgggtgggggggggggcaggggtTCAACATCACAGCTTACAGTTTGGGGGTGAATTTGTGTTTTAAGCCAAGAtaaacaatttgtttgtgtctcAAAGGCATTCGGCTATGGCTATTCCTATTCAAGACCTTTTATGTCCAGGTGAATGACCGTGATAGActagctgttgtgttttttggtGCAACGGTCGTGGTTATAACTCAGCCTACATTGCACAAACAAGCAACAGTAGATTACTAAGAATCATCCATCATAAAAAGGGGGTCTTTTGAATTTTCTAACCTTTGTCGCACTGTTACAAGGGGTACCTTgatctttatctttttttttttctctctttatcgctttgaaaaaagaaaaactgaattaaAATAACTGATTTATGCAATGAAATCACATAATCAgtcacagacaaaaaaaaagggccAAAAGCCATCACTTGAAGTTGAGGATCTATATTTTAACAAATACCTATTTTaatccttcacacacacacacacggcccaAATGCAAGta

Function

GO:

id name namespace
GO:0000165 MAPK cascade biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007369 gastrulation biological_process
GO:0005524 ATP binding molecular_function
GO:0004707 MAP kinase activity molecular_function

KEGG:

id description
K04371 ERK, MAPK1_3; mitogen-activated protein kinase 1/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88641 lncRNA upstream 149356 32290772 ~ 32291019 (+) True G66255
TU88639 lncRNA upstream 191135 32249001 ~ 32249240 (+) True G66253
TU88608 lncRNA upstream 230864 32206919 ~ 32209511 (+) False adamts3
XR_005639580.1 lncRNA upstream 676602 31762986 ~ 31763773 (+) False LOC120561307
TU88479 lncRNA upstream 676650 31759188 ~ 31763725 (+) True LOC120561307
TU88701 lncRNA downstream 358 32471185 ~ 32474048 (+) True G66294
TU88702 lncRNA downstream 3660 32474487 ~ 32475080 (+) True G66295
TU88703 lncRNA downstream 7665 32478492 ~ 32487187 (+) False LOC120560610
TU88700 lncRNA downstream 40792 32511619 ~ 32515505 (+) True G66293
TU88734 lncRNA downstream 139082 32609909 ~ 32612938 (+) False slc39a14
XM_039803565.1 mRNA upstream 13993 32404387 ~ 32426382 (+) False rufy3
XM_039803566.1 mRNA upstream 13993 32407166 ~ 32426382 (+) True rufy3
XM_039803568.1 mRNA upstream 18356 32404390 ~ 32422019 (+) False rufy3
XM_039803569.1 mRNA upstream 18356 32407171 ~ 32422019 (+) False rufy3
XM_039803991.1 mRNA upstream 230841 32032576 ~ 32209534 (+) True adamts3
XM_039803277.1 mRNA downstream 6211 32477038 ~ 32510737 (+) True LOC120560610
XM_039803280.1 mRNA downstream 7511 32478338 ~ 32510737 (+) False LOC120560610
XM_039803278.1 mRNA downstream 9825 32480652 ~ 32510737 (+) False LOC120560610
XM_039803279.1 mRNA downstream 14897 32485724 ~ 32510737 (+) False LOC120560610
XM_039802543.1 mRNA downstream 101373 32572200 ~ 32610825 (+) True slc39a14
TU88651 other upstream 70391 32364860 ~ 32369984 (+) True G66263
TU88642 other upstream 110385 32322507 ~ 32329990 (+) True G66256
TU88617 other upstream 303409 32126293 ~ 32136966 (+) True G66231
XR_005639593.1 other upstream 630096 31809632 ~ 31810279 (+) False dmrt3a
TU88223 other upstream 1554210 30857580 ~ 30886165 (+) False LOC120561064
unassigned_transcript_266 other downstream 100861 32571688 ~ 32571759 (+) True trnap-ugg
XR_005639474.1 other downstream 606419 33077246 ~ 33112816 (+) False cds1
TU89079 other downstream 1305098 33775925 ~ 33776398 (+) True G66578
XR_005639528.1 other downstream 2043183 34514010 ~ 34527405 (+) False cfap157
TU89395 other downstream 2295119 34765946 ~ 34773700 (+) False LOC120561070

Expression Profile