RNA id: TU88701


Basic Information

Item Value
RNA id TU88701
length 2864
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G66294
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 32471185 ~ 32474048 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCAAATTACAAGTGCATTGAAAGATTTCACCATCAATTTCTGCCTTAGCCACGAGAAACCTAAAGGAAAAGTCGGTTTATTTCACACAAGTCTGTATGTACAGTGTGAAATATTTCATATGGGAGAAAACTGCGTCAGGATAGGAATTCAGTTATCACACACAACTCGTTTTCGTCTGGAGGAAATGTTGTCGTGCCTCCTTTTACTTCCTGTTTCgtgttttcttttgtattcttcttcttcagtctctctctcgccTTGTTAGAATGATACTGTGCCCTTTGCATGACTGTTATAAGCTCTGTATACAAAGACGACGATGTTAAGTGCCACACGAGCCGGGCGGCTCCACCGGGAGAGCGCCCAGGCTATTTCTGTTCTACCTTTTTGTGGTACATCACACTTTCCAATCACACGGTGCTTTTTGTCccgtttctttcttttgcttcagcattttctttgtctgtttttatgtcattttcttttaCAGATTTCAGTCTTGCATGCTAAGACGTGTAGTTGTGGTTGCAAATAGGAGAATAACCATATATCTGTATTTATACCAATCGCGCAGACACCACAGAACATGTTGTTTCCTCAACCTGAGAAATGGGATCCAGGCACGATACAGTTGAAAACATTGCTCAAACGTTAACAGATGAGGTTTTTCATTTCGTCCGTTGTAATATTTCTTTGCTTTAAATTGCACATTTTCACTTCTAATAAAAACAGTTGGCGGTGTcggtaccaaaaaaaaaagaagcagcagaAATCAAGACCATATTTTCAGTTCTTGTCAGTCACTGCTGatttaaaggccctgaacacccacacaggcgTTCGGAGTGAacctggctgattagacctcttcgcaggacgcaaaattacgaatcccactatggccacgccaagacccgccctacgaagcagctcgattggttggggttaggcatttcacctcgagtggttaaggttaggatagccgattggtcaggggataggacctgaacaaatggggttacgttacctcgcgtaagcatggacgcctggccaataaatacTATTGAAAggcgggtcttggcatggccatagtgggattcggaATATCGCTCCCAGGACTGTGGCCGCGTATAGACTGATTGATTCACATTTTCCTGAGTCTCTTGTTAGCTTTGTTGCACCAGTTAGGGCGGGACAAATGACAGCTTTACcattcttattggtagaaaagatttgtgacctaataagTTCCCATCTAATCTCTGGCCCACTTTAACTTAAGCAGAAGTCTAATCAGCTAGATCCTCTGAAATCAGCTGTCCGTGTGCTCAGAGGCTTTAAAGACTGTTGAATTTGAAGATATGATTTCAAGCAAACAAATTAAGACTTTAAATATGATATATGTGGAAACTttaggtggggggggggggacaagcCTGAAGCACCGAGGCTTCATCAACATAATGTGTCATTTCATTTGAGTAGCACTGCAGCGTCCAATGATGGCTGGCATTTCAGTTTGTTTAGTAAGTGGGCCTCAAATATTCACTCTCATGGTAACACCTAGCCTTAGTTAGTTTACAGTACTGCAGCTTCAAAAGAAATGCTCATTTGGTGATATGTTAGTGACCTTATGAATGAAACAAGTATTATTCACGACACTAAAGCATCTCGCAGTAGATTAAAGTCAAAATCTACTTGAAAAGATTCTTCAAGAATCGTTCTCTGCTGGCACTTAAACGTGAAAAATCTgagatttaaatataaaataagacAATTTTAGAACTATTGCGCTGCTTCAGgtgatttttttcattctttccgTTGATGACAACTATGTCTGTTGcctgtgaaaaaaaatattgggcAAGCCGCAAACTCatgatatttttatgtttctaaCAGAAGATGAGTAAATCTCAACTTTTCATTCTTATTATACATTGTCATACATAGCAAAAATCAAGTATGAGTTGTACAAATATTTCTCTTGAGGACAGAGCTGCTCTGGTAGAATTAAATTAGTGGACACAGTTTGGTTCTCTCTAGTTCTGGCTGAATAATGTTAGACTGAAACGGAGTAGGAGCAAAGAGAGGAGGCTGTAACGCCCTGCTGAAATGTACTAAGCCATAATGGGTCAGTGTGTTGCAACTCTGACCAcacccaacagtgatgtcacagcctGGAGTACACTTCTACATCACTTCAGCCAGATTAGAAGTTAAACCGCTGGAGGTcagcaaaaacattttcagacatTAAGAAGTAAGACTTCAGATTGATCTGTAATTATCACAgcaagatggctgctgctgctgagagaGCTGAGAGTCTTTAAGACACAGATACAAAAGATGTGCAATTTCCAATAATAAATGAATGATGTCCTTTCAAGGCAATTCCTCTGAACACATTTAAGTAGAATAACCGTCTCAAACTCATACGGTCTATTTTACATATAAATAGTGTGAACTTGCACAGTTCCATACAGGAAACCCTGAAGAAAATATAAGAAATAACAGATCcgaaaaaataaagtgttacaagaaaatgttcttttttttaaaaacaaaaaatttgtTCAGAGTTCCCTCTTTGCtcacacccaaaaaaaaacttgtttcgTTGGTTCCGATGATCGATTTAACTCATCCGATGACATTTGAAAAATGACCAAACTCCATTGCAGAATTGACCGTTTTTGCACTCTCAAATTTCACCTGATCGTGAGGTAAAGACTCGTCTGTCCCAGTGCTCCTCACAATTGCTGTACACACCAGTCTGTCACACGATTATTAAATGCACTTGCTTCTACAGTAGTTGGGATGGGACTTGTAATCCGAGGTGCCTGCCGGGACTTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88699 lncRNA upstream 360 32470359 ~ 32470825 (+) False mapk1
TU88641 lncRNA upstream 180166 32290772 ~ 32291019 (+) True G66255
TU88639 lncRNA upstream 221945 32249001 ~ 32249240 (+) True G66253
TU88608 lncRNA upstream 261674 32206919 ~ 32209511 (+) False adamts3
XR_005639580.1 lncRNA upstream 707412 31762986 ~ 31763773 (+) False LOC120561307
TU88702 lncRNA downstream 439 32474487 ~ 32475080 (+) True G66295
TU88703 lncRNA downstream 4444 32478492 ~ 32487187 (+) False LOC120560610
TU88700 lncRNA downstream 37571 32511619 ~ 32515505 (+) True G66293
TU88734 lncRNA downstream 135861 32609909 ~ 32612938 (+) False slc39a14
TU88731 lncRNA downstream 138951 32612999 ~ 32613908 (+) True G66319
XM_039803502.1 mRNA upstream 358 32440375 ~ 32470827 (+) True mapk1
XM_039803565.1 mRNA upstream 44803 32404387 ~ 32426382 (+) False rufy3
XM_039803566.1 mRNA upstream 44803 32407166 ~ 32426382 (+) True rufy3
XM_039803568.1 mRNA upstream 49166 32404390 ~ 32422019 (+) False rufy3
XM_039803569.1 mRNA upstream 49166 32407171 ~ 32422019 (+) False rufy3
XM_039803277.1 mRNA downstream 2990 32477038 ~ 32510737 (+) True LOC120560610
XM_039803280.1 mRNA downstream 4290 32478338 ~ 32510737 (+) False LOC120560610
XM_039803278.1 mRNA downstream 6604 32480652 ~ 32510737 (+) False LOC120560610
XM_039803279.1 mRNA downstream 11676 32485724 ~ 32510737 (+) False LOC120560610
XM_039802543.1 mRNA downstream 98152 32572200 ~ 32610825 (+) True slc39a14
TU88651 other upstream 101201 32364860 ~ 32369984 (+) True G66263
TU88642 other upstream 141195 32322507 ~ 32329990 (+) True G66256
TU88617 other upstream 334219 32126293 ~ 32136966 (+) True G66231
XR_005639593.1 other upstream 660906 31809632 ~ 31810279 (+) False dmrt3a
TU88223 other upstream 1585020 30857580 ~ 30886165 (+) False LOC120561064
unassigned_transcript_266 other downstream 97640 32571688 ~ 32571759 (+) True trnap-ugg
XR_005639474.1 other downstream 603198 33077246 ~ 33112816 (+) False cds1
TU89079 other downstream 1301877 33775925 ~ 33776398 (+) True G66578
XR_005639528.1 other downstream 2039962 34514010 ~ 34527405 (+) False cfap157
TU89395 other downstream 2291898 34765946 ~ 34773700 (+) False LOC120561070

Expression Profile