RNA id: TU88731


Basic Information

Item Value
RNA id TU88731
length 910
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G66319
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 32612999 ~ 32613908 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gaacatagggtcagtttcagcaaatatgacagaaagttagttatATTTGGTTTTTTTAAGggttacctactgcacctttatgACTACAAATAACCCGGTGGACAATATTTAGTGTATCGTACGGTTGTATTCAGAGTCCAGAAGTACACCAGTTTTTCTCTGTTCAATATTCAAAATTCAACACTTAGTAAGTGATCCAATCTTAAAACATACATACTTTTCTGTAGATTTAATATTAGCATAGAATAGAGCTATAGATTATTATTGGAGAGAAACTGGAAGCTGTATTTACTGTCACATTGTATAGTCCTTAGATTTTCCGTTATTCCTGGATGGAGAAGGCATTAAAATGGGGGATCATGAAGTACAGTATTATTGCTGCTTGATATGTAATTTATAAGGgggttttgtgttgttgtttgagccatatatttattttatgatttaCACCGAATATGACGTATACAGTTTCTGGTTTACACCACAAGCCATGAAAGCagacaaaaaatgatttgtCTTTTTATTAGTTGTTTATCTTTGTTTTAGTATTTAAGAAATAGGACAGTTCATTGCATTGCAAATGTTAACTATATGTTAAAAACTAAAGTTGGAGCATatgcacacatagacacaaaagTCTTCTTGTCAGTTATGATAATCTAAACCTCATAATTTCAAGGTTCGACACAAACTGATTGACTATCCGATAATGAATTCAGGAGCacagacaataaaacacaaaccTTTCAACAGAAGTTTCTCTTTTTCAGCGTCAAACCCACAAATCAATGTTTCACTTTCTTGAGATTTTGATAATTCAGactgttttaaagaaaatattgtaCCTAATGTAATTCATGGGAATCCTCATCAGCCTTCTCTGTGTGTCATGGACATCTTCTtttataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88734 lncRNA upstream 61 32609909 ~ 32612938 (+) False slc39a14
TU88700 lncRNA upstream 97494 32511619 ~ 32515505 (+) True G66293
TU88703 lncRNA upstream 125812 32478492 ~ 32487187 (+) False LOC120560610
TU88702 lncRNA upstream 137919 32474487 ~ 32475080 (+) True G66295
TU88701 lncRNA upstream 138951 32471185 ~ 32474048 (+) True G66294
TU88743 lncRNA downstream 71361 32685269 ~ 32693217 (+) False LOC120560708
XR_005639506.1 lncRNA downstream 71432 32685340 ~ 32694087 (+) True LOC120560708
TU88756 lncRNA downstream 106847 32720755 ~ 32738375 (+) True G66340
TU88897 lncRNA downstream 457629 33071537 ~ 33072722 (+) True G66439
TU88898 lncRNA downstream 458412 33072320 ~ 33072722 (+) False G66439
XM_039802543.1 mRNA upstream 2174 32572200 ~ 32610825 (+) True slc39a14
XM_039802541.1 mRNA upstream 2174 32572203 ~ 32610825 (+) False slc39a14
XM_039802542.1 mRNA upstream 2174 32581210 ~ 32610825 (+) False slc39a14
XM_039803277.1 mRNA upstream 102262 32477038 ~ 32510737 (+) True LOC120560610
XM_039803280.1 mRNA upstream 102262 32478338 ~ 32510737 (+) False LOC120560610
XM_039802540.1 mRNA downstream 984 32614892 ~ 32626689 (+) True ascc2
XM_039803505.1 mRNA downstream 22928 32636836 ~ 32659330 (+) True LOC120560720
XM_039803477.1 mRNA downstream 240806 32854714 ~ 32901547 (+) True rusc2
XM_039803479.1 mRNA downstream 240806 32854714 ~ 32901547 (+) False rusc2
XM_039803480.1 mRNA downstream 240806 32854714 ~ 32901547 (+) False rusc2
unassigned_transcript_266 other upstream 41240 32571688 ~ 32571759 (+) True trnap-ugg
TU88651 other upstream 243015 32364860 ~ 32369984 (+) True G66263
TU88642 other upstream 283009 32322507 ~ 32329990 (+) True G66256
TU88617 other upstream 476033 32126293 ~ 32136966 (+) True G66231
XR_005639593.1 other upstream 802720 31809632 ~ 31810279 (+) False dmrt3a
XR_005639474.1 other downstream 463338 33077246 ~ 33112816 (+) False cds1
TU89079 other downstream 1162017 33775925 ~ 33776398 (+) True G66578
XR_005639528.1 other downstream 1900102 34514010 ~ 34527405 (+) False cfap157
TU89395 other downstream 2152038 34765946 ~ 34773700 (+) False LOC120561070
TU89401 other downstream 2247591 34861499 ~ 34864266 (+) False G66832

Expression Profile