RNA id: TU89049


Basic Information

Item Value
RNA id TU89049
length 1951
lncRNA type sense_over
GC content 0.41
exon number 1
gene id antxr2a
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 33517599 ~ 33603625 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TATGCACTCGGGACAAGAAAATTAATAGAGCGTTATTCGACCGCAGGACAGCCTCCTGACCAGGATGATCTCCAGCTAGGTTTGAGGGATTGATGCCTTTAAGACCTTGACATGGCGCTTGCGGTGTTTTTTGCCCCTGTTTTCAGTGCAGTCTGCTCTGTGCTCAGCAAGGCGTAGCACATCACAGCCCAGACACCGCACACGCCATCAGTTAAGACTTTTAAGATATAGATAGAGCGGCCTCGACACTCCTCTGCCCACCGTCTCAATCCTCCGAGGGCTTCCCGGCCGCGTCACAACTCACTAGTTCACTCGCCACCAGAATAtcaaagtttaattaaaataattaaaggcAACAGCAAGCAGCAGCCTGTGAAGACCTGGCTGTCTCTTTTTTATGCCTTTTGACGTTGAATGACCTATTACTGCGTtattcacaggaaaaaaaaagaggacacggCGCCACGGTGATGGTGCACCACGTCCAAAACGCAAACCCAAAGCAACGGATGCGATGGACGGATAAGTATTGTTCATTTCCAGAAATTATGTCtccacccccccctccaccccccaaCTCCCTCTCCCCAAAAAGCagggtgtatatatatatatatatatatttatatatattgtggATTTCTCAAGCGCGCTGTCATGACGCCAATCCCAAATGATGTTAGTGTGAGCGGAAACACTGTGGGGGAGGAAAGGGGGCAGCAGCTGAAGAAAAAGGCTCGAATGATCCAGTCACTTCGGATGCCGTACTTCAGATGTAAAATGGATATTCGAGTCGAAACCTGACAAAGCGCGCCAGCTTTGACGGGAAGCGGTATAGACAATGACCAGTGGCTGGGTCAGTGGGATGTCTCTGTGCAAGCAGGGAAGCTTATCAAATGACACTAAAAATAAGTTCAACAACCATCAAGTTTGAGGGGAAATGGGTGACCGTCTCACATTCGGTGGGCACGAGGGCGCGCAGGACAGGCGGCGCGCACCACGCCAGTCTAATTATTCCTTTGTTTCCTCTTCATTCCAGTCGGAGGGACATAAATAATTCCAAATCGAATCCTCCGGGTGTGCTGGTATTTATGTCTCACTTAAACGTTTTTAGCCTCTTGCATAATTTTGCAGGCGGACATTTAATAGGCTCATCAGCCTCTTTCTGGACTGTCGCTGGACGAGGAAATTTTAGCACTTAgatcttgtcttttttttttttatgttacaaCCAAGAGCACAGGAATGTTATTAACCCGAACTAATGAGATATTTACATAGCAGTCACAACACAAGTCGCCCTGCTAATAACGCGTCGCAAGTTCCCTCTGTGTGCTCTCCACACCtcattacacacacagtattcatttttttatgccTATTTTTTGtagatttaaacaaaaaaaacataattgttGAATCTCTTTGtgccttttttaaattgatgcctttgatgaaaaaaataagtatttttgtatttttgcacTTGTTAAATTAGGTGGCTTTAATGTCATTTAAAcaccaaaagtaaaagaaagtgtgttgacatttcattaaaattttAAAACTATTTCACTTCAGCCAAGTTGTTTAACTTTAAATACAACTAAAACCTAAAAATGTAGATCATCACAATTGTTGATGCACTTATTTTTGTCAACATCCTTTTCAATTTTGGGTTTAATTTGATTTGCATGCACGACTTTCTGCTTAGTACATTATTTACATCTAAATTAAGGGGCAAAATGTGTAATTTATCATTTAATTATCTTGTACAGTTTTTGTCTTTCCTACTGCCTTTTTATATTCACGTAGCACCTTTAAGTCCAGGTTCAAGTCACACAAGCTGCACACGTGTGTGAGTTGCAACTGAaataccaaaacaatcttttttccAAAGCTTTTTTTATGAGTTTTacactgtttttatgttgttcTTGTTTTACACTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89021 lncRNA upstream 248687 33351699 ~ 33352950 (+) True G66522
TU89020 lncRNA upstream 251084 33349506 ~ 33350553 (+) True G66521
TU88986 lncRNA upstream 461544 33139868 ~ 33140093 (+) True G66498
TU88985 lncRNA upstream 465620 33135790 ~ 33136017 (+) True G66497
TU88984 lncRNA upstream 473735 33127702 ~ 33127902 (+) True G66496
TU89069 lncRNA downstream 121933 33725520 ~ 33725782 (+) True G66568
TU89072 lncRNA downstream 151982 33755569 ~ 33755955 (+) True G66571
XR_005639570.1 lncRNA downstream 166257 33769844 ~ 33772534 (+) True LOC120561187
XR_005639406.1 lncRNA downstream 272588 33876175 ~ 33877007 (+) True LOC120560041
TU89177 lncRNA downstream 584243 34187830 ~ 34281929 (+) True G66652
XM_039804106.1 mRNA upstream 28311 33517599 ~ 33573326 (+) False antxr2a
XM_039803542.1 mRNA upstream 257622 33303339 ~ 33344015 (+) True prkg2
XM_039802789.1 mRNA upstream 307536 33156914 ~ 33294101 (+) True rasgef1ba
XM_039802790.1 mRNA upstream 307536 33259709 ~ 33294101 (+) False rasgef1ba
XM_039802791.1 mRNA upstream 349230 33248404 ~ 33252407 (+) True LOC120560373
XM_039804184.1 mRNA downstream 175420 33779007 ~ 33790810 (+) False paqr3a
XM_039804183.1 mRNA downstream 175422 33779009 ~ 33790810 (+) False paqr3a
XM_039804185.1 mRNA downstream 175684 33779271 ~ 33790810 (+) True paqr3a
XM_039803019.1 mRNA downstream 566888 34170475 ~ 34187620 (+) True cnot6l
XM_039803801.1 mRNA downstream 669360 34272947 ~ 34280255 (+) True slc25a25a
XR_005639474.1 other upstream 488821 33077246 ~ 33112816 (+) False cds1
unassigned_transcript_266 other upstream 1029878 32571688 ~ 32571759 (+) True trnap-ugg
TU88651 other upstream 1231653 32364860 ~ 32369984 (+) True G66263
TU88642 other upstream 1271647 32322507 ~ 32329990 (+) True G66256
TU88617 other upstream 1464671 32126293 ~ 32136966 (+) True G66231
TU89079 other downstream 172338 33775925 ~ 33776398 (+) True G66578
XR_005639528.1 other downstream 910423 34514010 ~ 34527405 (+) False cfap157
TU89395 other downstream 1162359 34765946 ~ 34773700 (+) False LOC120561070
TU89401 other downstream 1257912 34861499 ~ 34864266 (+) False G66832
TU89402 other downstream 1257912 34861499 ~ 34864266 (+) False G66832

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00060748 True 5216 mRNA 0.40 17 NC_007116.7 39386225 ~ 39474235 (-)
grasscarp (Ctenopharyngodon idella) TU404873 True 215 lncRNA 0.40 1 CI01000146 1454216 ~ 1454430 (+)
mexican tetra (Astyanax mexicanus) TU404873 False 1916 lncRNA 0.44 1 NW_019172824.1 2390329 ~ 2392244 (-)