RNA id: XM_039804106.1


Basic Information

Item Value
RNA id XM_039804106.1
length 2387
RNA type mRNA
GC content 0.51
exon number 17
gene id antxr2a
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 33517599 ~ 33603625 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTTGGAGGAGCACGTGAAGGCAGGCTAACTTTTCTGCGGATTGTGTATACTTTTAGCACGGTGAAGTTTGTTGTTAGCTGTGATTAAGGTTTATCTTCTAAAAACAGGGGTCGATATGGGTTCATGAGCCAGCTGTAGTTTTATTCAGGATGTGAGCGAGTGAACGTTGAGTCAGGAAGATGAAGAAACGACACAGCTGTTGACGTCAGGCGGTGATTTCCTTTATTTCGCAGCACAATCAGTTAACTTGGTTGTTTTGGAGGAACTTTGACATGTAACGTTAAGCTCCTCGCACTGCGGGATGAGCGCTATATATTCAACCTCTGCGCTCTGTGAAACTCTCTAAAGGCTACTTGTTGCTTTTTCAACTCGAGACTTCACTGAACTTTGGTGGCAACAATGTTGGAAAAGCTGTCACGTTATTTCACCACGGAGGGTGAACTTTTTCATGGAAAGAGTCGGTGGACTTCGGCGGCGGCTGCTGTGCTCCTCCTGGGGTTGTTTGCGTCGTCTTGCTGGGCAGAAGAAGCATCCTGTCACGGAGCTTACGACCTCTACTTTGTTTTGGACAAGTCTGGAAGTGTCGCTAATGACTGGGTCGAGATTTACTCGTTTGTGAAGAACCTCACTGACAGATTTGTGAGCCCCAGAATGAGAGTCTCATTCATAGTCTTTTCGGCCCAAGCCAAAGTCCTGCTGCCTCTGACTGGAGACAGATCCCAGATACAAGAGGGTCTGAAGCGCTTGCGGGAAGTAAACCCAGCAGGTGAAACCTACATGCATGAAGGAATAAAAGCGGCCTCGGATCAGATACAGACCCAAACGACCAAGTCCTCGAGCATCATCCTGGCTTTGACGGACGGGAAACTTGAAGTTTACGTTCACGAGCTCACCGTGAAACAGGCTAATGAGGCGAGGAAATTCGGCGCCCGTGTTTACTGTGTGGGGATTAAGGACTTCGATGAGCAGCAGCTTGCTGATATTGCGGACACCAAGGACCAAGTGTTTCCTGTCAAAGATGGCTTCCACGCACTCAAAGGCATCGTCAATTCTATATTAAAGCGATCGTGCACAGAGATCCTGAGTGTGGAGCCCTCCAGTGTCTGTGTGAATGAGTCCTTCGACATCGTTCTCAGAGGGAACGGCTTTGCTGTCGGCCGCAGCAACGAAGGCGTCGTCTGCAGCTTCATAGTCGGCCAGCAAACCTTTAATCATAAGCCGAGTGTGGTGCGTAATGATTATCTGCTGTGTCCTGCACCGAAGCTCTATGAAGTGGGACAGACTATGGATGTTCTCATCAGCCTAAACCACGGCCAGTCCTTCATCTCCAGCGCCTACACCATCGCTGCTTCCACATGTTCAGATGGTTGGGCGGTGGCGATAGTCTTCCTGGTGCTGCTGATCCTCACCGCTCTGGCCCTCATGTGGTGGTTCTGGCCTCTTTGCTGCACAGTGGTCATCAAAGACCCGCCGCCACCTCCTCCACCGTCCCGTCCTCCGCCACCTgagccagaggagctgccCAAGAAGAAGTGGCCGACTGTAGACGCCTCCTActatggaggaagaggagctggAGGGATCAAACGCATGGAGGTGCGCTGGGGCGAGAAGGGCTCGACCGAGGAGGGGGCCAGGCTGGAGAAAGCCAAGAACGCCGTAGTGTCCATACCAGAGGATGTAGAGGAGCCAATGATCAAACGTCCCACTCCGAGGGCTGCCCCCACCTACCATCAAAACGAGAACAAATGGTACACTCCCATCAAGggTCGTCTCGACGCTTTGTGGGCTCTGCTTGGGCGGCAGTATGACCGAGTGTCCCTCATGCGACCCACAGATTCAGACAAGAACCCCTCAGACTGGTTGGAGCGGTGGCGGTGGCGCCGTGTGCCGAGCCTTTTCTTCATCACCTATTAAAATCAAAGCCTGGTCGTTTGGCGAGGACCGCTGGGATTCTTGGCtttaattaaattacattattgTTAACGTCAGCTTTGCCGAGGCCGGCTCTGTCGCGTGCACTTTGCCCTCCTCCTCCCCGGCTCACCTCCTGACAGACATatagaggagggaggaggaggggctgAGGATCACACATACATGCAGTAATGTATTCCAatgcctccccccccctcctcctcccctcccatcGATTTGAATTTTTAAAAAGATGGAAGCAGGGAGTCATGTTATGCAGCGAATATGTTCACAGTGAATATTCAATTAGCCTGCTTTGTATTTTGTATACGTGAATGTAACGATGTGACGGTGGCGGGTAATATGTAGTGAAGGGCCCTCGGATGAAGCTACATGTAATATGATCCGCtctaaaatgtttgcatttgatCACAGACATGCGTTATGAATAAACGTGTAAACATGTGAA

Function

GO:

id name namespace
GO:0000132 establishment of mitotic spindle orientation biological_process
GO:0005768 endosome cellular_component
GO:0030496 midbody cellular_component
GO:0005886 plasma membrane cellular_component
GO:0032154 cleavage furrow cellular_component
GO:0070938 contractile ring cellular_component
GO:0030864 cortical actin cytoskeleton cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89021 lncRNA upstream 164649 33351699 ~ 33352950 (+) True G66522
TU89020 lncRNA upstream 167046 33349506 ~ 33350553 (+) True G66521
TU88986 lncRNA upstream 377506 33139868 ~ 33140093 (+) True G66498
TU88985 lncRNA upstream 381582 33135790 ~ 33136017 (+) True G66497
TU88984 lncRNA upstream 389697 33127702 ~ 33127902 (+) True G66496
TU89049 lncRNA downstream 28311 33601637 ~ 33603587 (+) False antxr2a
TU89069 lncRNA downstream 152194 33725520 ~ 33725782 (+) True G66568
TU89072 lncRNA downstream 182243 33755569 ~ 33755955 (+) True G66571
XR_005639570.1 lncRNA downstream 196518 33769844 ~ 33772534 (+) True LOC120561187
XR_005639406.1 lncRNA downstream 302849 33876175 ~ 33877007 (+) True LOC120560041
XM_039803542.1 mRNA upstream 173584 33303339 ~ 33344015 (+) True prkg2
XM_039802789.1 mRNA upstream 223498 33156914 ~ 33294101 (+) True rasgef1ba
XM_039802790.1 mRNA upstream 223498 33259709 ~ 33294101 (+) False rasgef1ba
XM_039802791.1 mRNA upstream 265192 33248404 ~ 33252407 (+) True LOC120560373
XM_039802687.1 mRNA upstream 406766 33077246 ~ 33110833 (+) True cds1
XM_039804184.1 mRNA downstream 205681 33779007 ~ 33790810 (+) False paqr3a
XM_039804183.1 mRNA downstream 205683 33779009 ~ 33790810 (+) False paqr3a
XM_039804185.1 mRNA downstream 205945 33779271 ~ 33790810 (+) True paqr3a
XM_039803019.1 mRNA downstream 597149 34170475 ~ 34187620 (+) True cnot6l
XM_039803801.1 mRNA downstream 699621 34272947 ~ 34280255 (+) True slc25a25a
XR_005639474.1 other upstream 404783 33077246 ~ 33112816 (+) False cds1
unassigned_transcript_266 other upstream 945840 32571688 ~ 32571759 (+) True trnap-ugg
TU88651 other upstream 1147615 32364860 ~ 32369984 (+) True G66263
TU88642 other upstream 1187609 32322507 ~ 32329990 (+) True G66256
TU88617 other upstream 1380633 32126293 ~ 32136966 (+) True G66231
TU89079 other downstream 202599 33775925 ~ 33776398 (+) True G66578
XR_005639528.1 other downstream 940684 34514010 ~ 34527405 (+) False cfap157
TU89395 other downstream 1192620 34765946 ~ 34773700 (+) False LOC120561070
TU89401 other downstream 1288173 34861499 ~ 34864266 (+) False G66832
TU89402 other downstream 1288173 34861499 ~ 34864266 (+) False G66832

Expression Profile