RNA id: TU89069


Basic Information

Item Value
RNA id TU89069
length 263
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G66568
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 33725520 ~ 33725782 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aaaaaaagtttctcacTGTAGACAATCCCTAACTGTTTTCAACCGATATTCCACAGAGGAAAATAAACACCAGTTTGCAGTCAACAAAACCCAAAGCACAGTTTCAGTAAATTATTGACAGTTTAACAGAGCATGCTAATTTTGCTTAAATGTCCAGCAATCAATAAGTTCAACCAGAATCACTTTAGTTTACACTCACTGTCCCTCCAAAGGTGAAGCTTTGGGTCCGCTGAAAATTGCTCCCAGAGTCTCTTGTCCGTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89049 lncRNA upstream 121933 33601637 ~ 33603587 (+) False antxr2a
TU89021 lncRNA upstream 372570 33351699 ~ 33352950 (+) True G66522
TU89020 lncRNA upstream 374967 33349506 ~ 33350553 (+) True G66521
TU88986 lncRNA upstream 585427 33139868 ~ 33140093 (+) True G66498
TU88985 lncRNA upstream 589503 33135790 ~ 33136017 (+) True G66497
TU89072 lncRNA downstream 29787 33755569 ~ 33755955 (+) True G66571
XR_005639570.1 lncRNA downstream 44062 33769844 ~ 33772534 (+) True LOC120561187
XR_005639406.1 lncRNA downstream 150393 33876175 ~ 33877007 (+) True LOC120560041
TU89177 lncRNA downstream 462048 34187830 ~ 34281929 (+) True G66652
TU89217 lncRNA downstream 705160 34430942 ~ 34439928 (+) True G66689
XM_039804107.1 mRNA upstream 121895 33517600 ~ 33603625 (+) True antxr2a
XM_039804106.1 mRNA upstream 152194 33517599 ~ 33573326 (+) False antxr2a
XM_039803542.1 mRNA upstream 381505 33303339 ~ 33344015 (+) True prkg2
XM_039802789.1 mRNA upstream 431419 33156914 ~ 33294101 (+) True rasgef1ba
XM_039804184.1 mRNA downstream 53225 33779007 ~ 33790810 (+) False paqr3a
XM_039804183.1 mRNA downstream 53227 33779009 ~ 33790810 (+) False paqr3a
XM_039804185.1 mRNA downstream 53489 33779271 ~ 33790810 (+) True paqr3a
XM_039803019.1 mRNA downstream 444693 34170475 ~ 34187620 (+) True cnot6l
XM_039803801.1 mRNA downstream 547165 34272947 ~ 34280255 (+) True slc25a25a
XR_005639474.1 other upstream 612704 33077246 ~ 33112816 (+) False cds1
unassigned_transcript_266 other upstream 1153761 32571688 ~ 32571759 (+) True trnap-ugg
TU88651 other upstream 1355536 32364860 ~ 32369984 (+) True G66263
TU88642 other upstream 1395530 32322507 ~ 32329990 (+) True G66256
TU88617 other upstream 1588554 32126293 ~ 32136966 (+) True G66231
TU89079 other downstream 50143 33775925 ~ 33776398 (+) True G66578
XR_005639528.1 other downstream 788228 34514010 ~ 34527405 (+) False cfap157
TU89395 other downstream 1040164 34765946 ~ 34773700 (+) False LOC120561070
TU89401 other downstream 1135717 34861499 ~ 34864266 (+) False G66832
TU89402 other downstream 1135717 34861499 ~ 34864266 (+) False G66832

Expression Profile