RNA id: TU89223


Basic Information

Item Value
RNA id TU89223
length 260
lncRNA type inter_gene
GC content 0.60
exon number 1
gene id G66692
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 34456490 ~ 34456749 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTAGACATCACTGAAAGTGGCGTCCACGTTGTCAGGGATGCCGCTCCAGTCCTGCATGCTGCGTGGGTAAACGGACTCGACCCGGTTCTCGCGGGCGCTGAACCTCCAGTAGCTGCCTGACTTGAAGAAGTAGGTGTTGTAGTTGGAGTCGTCCCCCCAGCGCAGCGCCGCCTGGATCCCGGACACCGACAGACCCAAAGTCCTGATGGACTCCGGCCCTCTGATTTGCGTCTCAGCATCGAACACCCAGTAGTTCTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89217 lncRNA upstream 16562 34430942 ~ 34439928 (+) True G66689
TU89177 lncRNA upstream 174561 34187830 ~ 34281929 (+) True G66652
XR_005639406.1 lncRNA upstream 579483 33876175 ~ 33877007 (+) True LOC120560041
XR_005639570.1 lncRNA upstream 683956 33769844 ~ 33772534 (+) True LOC120561187
TU89072 lncRNA upstream 700535 33755569 ~ 33755955 (+) True G66571
TU89226 lncRNA downstream 29789 34486538 ~ 34486751 (+) True G66695
TU89323 lncRNA downstream 51393 34508142 ~ 34509613 (+) True G66769
TU89399 lncRNA downstream 358840 34815589 ~ 34816327 (+) True G66830
TU89406 lncRNA downstream 372143 34828892 ~ 34829654 (+) True G66834
TU89403 lncRNA downstream 404750 34861499 ~ 34864690 (+) True G66832
XM_039804146.1 mRNA upstream 17983 34427821 ~ 34438507 (+) True smarcb1a
XM_039802752.1 mRNA upstream 34996 34372954 ~ 34421494 (+) False si:ch211-251j10.3
XM_039803764.1 mRNA downstream 57261 34514010 ~ 34526099 (+) True cfap157
XM_039803765.1 mRNA downstream 70660 34527409 ~ 34535705 (+) True gstt1a
XM_039803766.1 mRNA downstream 94369 34551118 ~ 34563151 (+) True p2rx7
XM_039802646.1 mRNA downstream 131384 34588133 ~ 34592716 (+) True LOC120560310
XM_039804034.1 mRNA downstream 309181 34765930 ~ 34773806 (+) True LOC120561070
TU89079 other upstream 680092 33775925 ~ 33776398 (+) True G66578
XR_005639474.1 other upstream 1343674 33077246 ~ 33112816 (+) False cds1
unassigned_transcript_266 other upstream 1884731 32571688 ~ 32571759 (+) True trnap-ugg
TU88651 other upstream 2086506 32364860 ~ 32369984 (+) True G66263
TU88642 other upstream 2126500 32322507 ~ 32329990 (+) True G66256
XR_005639528.1 other downstream 57261 34514010 ~ 34527405 (+) False cfap157
TU89395 other downstream 309197 34765946 ~ 34773700 (+) False LOC120561070
TU89401 other downstream 404750 34861499 ~ 34864266 (+) False G66832
TU89402 other downstream 404750 34861499 ~ 34864266 (+) False G66832
TU89404 other downstream 404750 34861499 ~ 34864266 (+) False G66832