RNA id: TCONS_00074990


Basic Information

Item Value
RNA id TCONS_00074990
length 449
lncRNA type inter_gene
GC content 0.49
exon number 4
gene id XLOC_037937
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 32197328 ~ 32209640 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGACCGCCGCTGCGAGCTGCTCAACGGTAGAGACGCCCTGTAGCCAGAAGTGACTCGTGTGTGCGGGGAGAGCCCTGGTTCTTCTTGAGCGACGCTGCTCCATCAAGATGACCCAAGAACAACTTTCCAAAAGGTTTTAATGTCTCAAGGAGGGACTGGTTATTACGGTCGTGAGTGTGACTGGTGGCCTGTTGGTGTTTTCATTTATGAGCTTCTAGCGACACTCCATTTCATTCCGAGTCTCTGGTGGGCACATATGGAAAGATCATGGATCacaaaaacatcttaactttCCCAGATGATATTGAAATGTCAAAGGATGGCAAAGACCTCATCTGTGCCTTTCTGAGTAGCAAGGAGGTGAGGCTTGGCCGGACTGGAGTGGATGAAATAAAATGTCACCCCTTCTTCAAGAACGATCAGTGGACCTTCGACACCATATGAGACA

Function

GO:

id name namespace
GO:1902285 semaphorin-plexin signaling pathway involved in neuron projection guidance biological_process
GO:1902287 semaphorin-plexin signaling pathway involved in axon guidance biological_process
GO:0010770 positive regulation of cell morphogenesis involved in differentiation biological_process
GO:0050772 positive regulation of axonogenesis biological_process
GO:0071526 semaphorin-plexin signaling pathway biological_process
GO:0002116 semaphorin receptor complex cellular_component
GO:0017154 semaphorin receptor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00074469 lncRNA downstream 25387 32174379 ~ 32175263 (-) True XLOC_037935
TCONS_00074465 lncRNA downstream 94870 32096331 ~ 32105780 (-) True XLOC_037933
TCONS_00074464 lncRNA downstream 94871 32096331 ~ 32105779 (-) False XLOC_037933
TCONS_00074988 lncRNA downstream 142316 32057706 ~ 32058334 (-) True XLOC_037932
TCONS_00075387 lncRNA downstream 390603 31797845 ~ 31810047 (-) True XLOC_037930
TCONS_00074991 lncRNA upstream 5517 32215157 ~ 32221673 (-) False XLOC_037938
TCONS_00074472 lncRNA upstream 7746 32217386 ~ 32217873 (-) True XLOC_037938
TCONS_00074992 lncRNA upstream 18918 32228558 ~ 32235223 (-) False XLOC_037939
TCONS_00074473 lncRNA upstream 21301 32230941 ~ 32231427 (-) True XLOC_037939
TCONS_00074993 lncRNA upstream 28578 32238218 ~ 32257884 (-) False XLOC_037940
TCONS_00074470 mRNA downstream 9030 32190670 ~ 32191620 (-) True XLOC_037936
TCONS_00074468 mRNA downstream 23533 32161623 ~ 32177117 (-) False XLOC_037935
TCONS_00074467 mRNA downstream 42362 32109911 ~ 32158288 (-) True XLOC_037934
TCONS_00074466 mRNA downstream 58339 32109911 ~ 32142311 (-) False XLOC_037934
TCONS_00074463 mRNA downstream 285227 31838044 ~ 31915423 (-) True XLOC_037931
TCONS_00074477 mRNA upstream 76965 32286605 ~ 32300783 (-) False XLOC_037943
TCONS_00074478 mRNA upstream 77474 32287114 ~ 32300611 (-) True XLOC_037943
TCONS_00074479 mRNA upstream 103280 32312920 ~ 32343673 (-) False XLOC_037944
TCONS_00074484 mRNA upstream 350759 32560399 ~ 32604414 (-) False XLOC_037947
TCONS_00074483 mRNA upstream 350759 32560399 ~ 32604414 (-) True XLOC_037947
TCONS_00074461 other downstream 439121 31759506 ~ 31761529 (-) False XLOC_037929
TCONS_00074451 other downstream 675621 31518754 ~ 31525029 (-) False XLOC_037926
TCONS_00074446 other downstream 886326 31274108 ~ 31314324 (-) True XLOC_037925
TCONS_00074442 other downstream 1012791 31187738 ~ 31187859 (-) True XLOC_037923
TCONS_00074437 other downstream 1492696 30707839 ~ 30707954 (-) True XLOC_037916
TCONS_00074475 other upstream 50174 32259814 ~ 32264658 (-) False XLOC_037940
TCONS_00074476 other upstream 64668 32274308 ~ 32279187 (-) True XLOC_037942
TCONS_00074481 other upstream 145595 32355235 ~ 32358665 (-) True XLOC_037945
TCONS_00074482 other upstream 315615 32525255 ~ 32525371 (-) True XLOC_037946
TCONS_00074489 other upstream 452674 32662314 ~ 32665462 (-) True XLOC_037951