RNA id: XM_039804034.1


Basic Information

Item Value
RNA id XM_039804034.1
length 897
RNA type mRNA
GC content 0.58
exon number 2
gene id LOC120561070
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 34765930 ~ 34773806 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTTCAGAAGACAGGAAGCAGAGTCACTCGGTCGACCTCATCACACCACAGCAACAAGTGGCAGAAACTGTCTTAAATGATTGAATAAATCAAGAAGTCCACGTCTGAACCATGAACAAACGAAAACTGAGTTTCAAATGGTTTGGGAGCCTCAGCAATCTCTCCACCCGCCGCCAGTCGGAGAAGGCCAACATCAAGTCAGTCCCAGAGCATGATGGGAGCCGCAGCGGTGCCAAATCAGCAGCGGGGGAACAATCGGTGGACGACATGGAGGACTGTCTCCGCAGCCCCAGCTACGCCCGCTCCAGCGAGATGTACACACATGTGGGCACTGTGCCACGCAGCCAGACACAGAAGAAGAGCTGCAGGGGgctgaaggagaagaagaagaaagaggaggaggggttGGTGAGTGGAGGGCAGAGCCAGTGGAAGGCGGGGGAACATGTCCGAGACTCCCCTCTGCTCGGTGCCCTGTCCGGCCTCAGTACGACCAGTCTGGACCGGCCTCTACCTGTTTCTGCACCGGCCTGGCCGCTGCCCGCCACCCCGACACCCAGCCAGGCTTCACCTTTGACCTCAGCACCTGAAAGCTGCTTCAATGATCCTTCAGTGGACCCCGTTTGGAGCTCAGGGTCATTGTCAAAGAGCAGGGATGCTTTAGAAACTGGTAGAGCTGTAAGAGAGGCTTCTAACATGGCGACCAATGGCACCAAAGCGGCTTTGCCGCAGGATGTTTACGTTCCGATGGATCCGATAGCTGAAGCAGCTCGCAGCCACGTGGGCATCCcacagggaggggggggggggggccgcaAGGGGGGCCACACACCACCCAACAAATTTAAGGCGGGCTTGGGGGAGGGAAGCGTGGTGACAGGTGAGAAAGTGGATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89323 lncRNA upstream 256317 34508142 ~ 34509613 (+) True G66769
TU89226 lncRNA upstream 279179 34486538 ~ 34486751 (+) True G66695
TU89223 lncRNA upstream 309181 34456490 ~ 34456749 (+) True G66692
TU89217 lncRNA upstream 326002 34430942 ~ 34439928 (+) True G66689
TU89177 lncRNA upstream 484001 34187830 ~ 34281929 (+) True G66652
TU89399 lncRNA downstream 41783 34815589 ~ 34816327 (+) True G66830
TU89406 lncRNA downstream 55086 34828892 ~ 34829654 (+) True G66834
TU89403 lncRNA downstream 87693 34861499 ~ 34864690 (+) True G66832
TU89494 lncRNA downstream 226472 35000278 ~ 35002196 (+) True G66907
XR_005639572.1 lncRNA downstream 481855 35255661 ~ 35258072 (+) True LOC120561203
XM_039802646.1 mRNA upstream 173214 34588133 ~ 34592716 (+) True LOC120560310
XM_039803766.1 mRNA upstream 202779 34551118 ~ 34563151 (+) True p2rx7
XM_039803765.1 mRNA upstream 230225 34527409 ~ 34535705 (+) True gstt1a
XM_039803764.1 mRNA upstream 239831 34514010 ~ 34526099 (+) True cfap157
XM_039804146.1 mRNA upstream 327423 34427821 ~ 34438507 (+) True smarcb1a
XM_039802732.1 mRNA downstream 943 34774749 ~ 34805947 (+) False sh2d3cb
XM_039802731.1 mRNA downstream 7593 34781399 ~ 34805947 (+) True sh2d3cb
XM_039802045.1 mRNA downstream 35278 34809084 ~ 34814495 (+) True tor2a
XM_039804035.1 mRNA downstream 111732 34885538 ~ 34895629 (+) True LOC120561071
XM_039804036.1 mRNA downstream 177696 34951502 ~ 34952477 (+) True LOC120561072
XR_005639528.1 other upstream 238525 34514010 ~ 34527405 (+) False cfap157
TU89079 other upstream 989532 33775925 ~ 33776398 (+) True G66578
XR_005639474.1 other upstream 1653114 33077246 ~ 33112816 (+) False cds1
unassigned_transcript_266 other upstream 2194171 32571688 ~ 32571759 (+) True trnap-ugg
TU88651 other upstream 2395946 32364860 ~ 32369984 (+) True G66263
TU89401 other downstream 87693 34861499 ~ 34864266 (+) False G66832
TU89402 other downstream 87693 34861499 ~ 34864266 (+) False G66832
TU89404 other downstream 87693 34861499 ~ 34864266 (+) False G66832
TU89504 other downstream 273049 35046855 ~ 35059618 (+) False LOC120561428
XR_005639497.1 other downstream 748859 35522665 ~ 35547463 (+) False LOC120560625

Expression Profile